TF Information

OGLUM06G29480 *(Oryza glumaepatula)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00505 (HMG_box)	IPR000910	OGLUM06G29480	T331597_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HMG-1 M02720_2.00	Pisum sativum	STYGTDHTY	RADHACRAS	SELEX Mathelier et al.(2014) MA0044.1	0.645	0.710
NHP6A M01566_2.00	Saccharomyces cerevisiae	NHRYWWWN	NWWWRYDN	PBM Zhu et al.(2009) Nhp6a	0.443	0.420
NHP6A M08606_2.00	Saccharomyces cerevisiae	DNDHNNWTATATADWRDNNDN	NHNNHYWHTATATAWNNDHNH	Misc DeBoer et al.(2011) YPR052C_879	0.443	0.420
NHP6B M01565_2.00	Saccharomyces cerevisiae	NNWHWRYDNN	NNHRYWDWNN	PBM Zhu et al.(2009) Nhp6b	0.437	0.391
NHP6B M08603_2.00	Saccharomyces cerevisiae	HNTHHNWWTATAWWWWRNDN	NHNYWWWWTATAWWNDDAND	Misc DeBoer et al.(2011) YBR089C-A_792	0.437	0.391
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OGLUM06G29480.1	Sox	108	187	PKRAPSAFFVFMGFSFDLVSLREEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYN
OGLUM06G29480.2	Sox	42	121	PKRAPSAFFVFMGFSFDLVSLREEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYN

Links
Other Sox family TFs
Other *Oryza glumaepatula* TFs

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450 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action