CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
OLONG_015646
(
Oryza longistaminata
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
OLONG_015646
T331620_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OLONG_015646-R1
Sox
184
228
CSFVGTYKELRKHVKSEHPLAKPREVDPILEQKWRLLEIERERQD
Links
Other
Sox
family TFs
Other
Oryza longistaminata
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ONIVA02G36110
Oryza nivara
ONIVA02G36110
I
0.741
ORGLA02G0294700
Oryza glaberrima
ORGLA02G0294700
N
0.741
OPUNC02G31450
Oryza punctata
OPUNC02G31450
N
0.741
OMERI02G32400
Oryza meridionalis
OMERI02G32400
I
0.741
Pavir.J01310
Panicum virgatum
Pavir.J01310
N
0.741
BGIOSGA009119
Oryza indica
BGIOSGA009119
N
0.741
Pavir.Aa00349
Panicum virgatum
Pavir.Aa00349
N
0.741
Si017699m.g
Setaria italica
Si017699m.g
N
0.741
OBART02G34050
Oryza barthii
OBART02G34050
N
0.741
OS02G0770600
Oryza sativa
OS02G0770600
N
0.741
OB07G29110
Oryza brachyantha
OB07G29110
N
0.741
ORUFI02G35580
Oryza rufipogon
ORUFI02G35580
I
0.741
LPERR02G27910
Leersia perrieri
LPERR02G27910
N
0.741
OGLUM02G35200
Oryza glumaepatula
OGLUM02G35200
I
0.741
OB02G40920
Oryza brachyantha
OB02G40920
N
0.735
mgf013454m
Mimulus guttatus
mgf013454m
N
0.697
mgf000387m
Mimulus guttatus
mgf000387m
N
0.697
POPTR_0003s01620
Populus trichocarpa
POPTR_0003s01620
N
0.683
SapurV1A.0647s0030
Salix purpurea
SapurV1A.0647s0030
N
0.679
orange1.1g017878m.g
Citrus sinensis
orange1.1g017878m.g
N
0.679
Ciclev10001601m.g
Citrus clementina
Ciclev10001601m.g
N
0.679
BRADI3G57700
Brachypodium distachyon
BRADI3G57700
N
0.667
F775_20121
Aegilops tauschii
F775_20121
N
0.663
MLOC_54605
Hordeum vulgare
MLOC_54605
N
0.663
Traes_6DL_647FC758E1
Triticum aestivum
Traes_6DL_647FC758E1
N
0.663
TRIUR3_20834
Triticum urartu
TRIUR3_20834
N
0.663
30116.m000393
Ricinus communis
30116.m000393
N
0.653
Aquca_014_00165
Aquilegia coerulea
Aquca_014_00165
N
0.651
orange1.1g020440m.g
Citrus sinensis
orange1.1g020440m.g
N
0.650
Ciclev10001827m.g
Citrus clementina
Ciclev10001827m.g
N
0.650
PGSC0003DMG400023744
Solanum tuberosum
PGSC0003DMG400023744
N
0.646
Gorai.005G260200
Gossypium raimondii
Gorai.005G260200
N
0.635
GSMUA_Achr2G01240_001
Musa acuminata
GSMUA_Achr2G01240_001
N
0.634
gene11787-v1.0-hybrid
Fragaria vesca
gene11787-v1.0-hybrid
N
0.623
SapurV1A.0869s0080
Salix purpurea
SapurV1A.0869s0080
N
0.622
POPTR_0001s21610
Populus trichocarpa
POPTR_0001s21610
N
0.622
PGSC0003DMG400026151
Solanum tuberosum
PGSC0003DMG400026151
N
0.621
PRUPE_ppa007591mg
Prunus persica
PRUPE_ppa007591mg
N
0.610
Cla002005
Citrullus lanatus
Cla002005
N
0.604
PK04394.1
Cannabis sativa
PK04394.1
N
0.604
Cucsa.239250
Cucumis sativus
Cucsa.239250
N
0.604
evm.TU.supercontig_49.134
Carica papaya
evm.TU.supercontig_49.134
N
0.598
PK16821.1
Cannabis sativa
PK16821.1
N
0.598
VIT_12s0034g00960
Vitis vinifera
VIT_12s0034g00960
N
0.591
VIT_18s0001g03950
Vitis vinifera
VIT_18s0001g03950
N
0.586
MDP0000597087
Malus domestica
MDP0000597087
N
0.583
TCM_006422
Theobroma cacao
TCM_006422
N
0.576
cassava19406.valid.m1
Manihot esculenta
cassava19406.valid.m1
N
0.563
MDP0000634922
Malus domestica
MDP0000634922
N
0.543
GSMUA_Achr8G18160_001
Musa acuminata
GSMUA_Achr8G18160_001
N
0.543
evm.TU.supercontig_49.133
Carica papaya
evm.TU.supercontig_49.133
N
0.542
Thhalv10028879m.g
Eutrema salsugineum
Thhalv10028879m.g
N
0.528