OLONG_021730 (Oryza longistaminata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OLONG_021730 T331623_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OLONG_021730-R1 Sox 149 214
OLONG_021730-R1 Sox 277 343
OLONG_021730-R1 Sox 406 474

Links

Other Sox family TFs
Other Oryza longistaminata TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.729
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.729
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.729
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.729
OBART02G11160 Oryza barthii OBART02G11160 I 0.729
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.720
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.696
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.625
OB02G19930 Oryza brachyantha OB02G19930 N 0.615
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.596
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.589
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.569
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.567
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.555
Si017040m.g Setaria italica Si017040m.g I 0.553
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.547
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.535
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.484
mgf015439m Mimulus guttatus mgf015439m I 0.472
F775_10696 Aegilops tauschii F775_10696 N 0.464
OS02G0258200 Oryza sativa OS02G0258200 N 0.450
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.434
Pm024077 Prunus mume Pm024077 I 0.434
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.429
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.423
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.421