OMERI02G11890 (Oryza meridionalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OMERI02G11890 T331627_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI02G11890.1 Sox 157 222
OMERI02G11890.1 Sox 284 350
OMERI02G11890.1 Sox 412 480

Links

Other Sox family TFs
Other Oryza meridionalis TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.709
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.709
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.709
OBART02G11160 Oryza barthii OBART02G11160 I 0.709
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.709
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.700
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.696
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.656
OB02G19930 Oryza brachyantha OB02G19930 N 0.654
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.627
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.620
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.599
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.598
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.585
Si017040m.g Setaria italica Si017040m.g I 0.583
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.552
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.540
mgf015439m Mimulus guttatus mgf015439m I 0.481
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.467
F775_10696 Aegilops tauschii F775_10696 N 0.464
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.456
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.455
TCM_016416 Theobroma cacao TCM_016416 I 0.437
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.430
OS02G0258200 Oryza sativa OS02G0258200 N 0.430
Cla011101 Citrullus lanatus Cla011101 I 0.425
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.420
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.420
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.417
Pm024077 Prunus mume Pm024077 I 0.417