OMERI04G18350 (Oryza meridionalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OMERI04G18350 T331632_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI04G18350.1 Sox 25 80

Links

Other Sox family TFs
Other Oryza meridionalis TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.741
OBART04G21800 Oryza barthii OBART04G21800 N 0.741
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.741
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.741
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.741
OB04G28810 Oryza brachyantha OB04G28810 N 0.741
OS04G0564600 Oryza sativa OS04G0564600 N 0.741
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.741
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.735
Traes_2DL_6CACFD720 Triticum aestivum Traes_2DL_6CACFD720 N 0.631
F775_06533 Aegilops tauschii F775_06533 N 0.631
BRADI5G18460 Brachypodium distachyon BRADI5G18460 N 0.609
Si011290m.g Setaria italica Si011290m.g N 0.568
Traes_2BL_3EF023231 Triticum aestivum Traes_2BL_3EF023231 N 0.540
Traes_2AL_020BC1DF2 Triticum aestivum Traes_2AL_020BC1DF2 N 0.540
LPERR04G17840 Leersia perrieri LPERR04G17840 N 0.539
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.523
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.515
TCM_042534 Theobroma cacao TCM_042534 I 0.511
MLOC_57354 Hordeum vulgare MLOC_57354 N 0.510
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.481
PK14705.1 Cannabis sativa PK14705.1 I 0.475
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.470
Hsal_18129--FBpp0074818_DROME Harpegnathos saltator Hsal_18129--FBpp0074818_DROME N 0.468
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.464
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.460
OLONG_013579 Oryza longistaminata OLONG_013579 N 0.460
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.457
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.452
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.450
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.450
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.450
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.450
ANCCAN_02453 Ancylostoma caninum ANCCAN_02453 N 0.445
SVUK_0000188101 Strongylus vulgaris SVUK_0000188101 N 0.445
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.443
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.443
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.440
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.439
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.437
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.437
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.437
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.437
Si007288m.g Setaria italica Si007288m.g I 0.436
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.436
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.432
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.428
Pavir.Ga01019 Panicum virgatum Pavir.Ga01019 N 0.428
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.428
Pavir.Gb00881 Panicum virgatum Pavir.Gb00881 N 0.428
GRMZM2G145968 Zea mays GRMZM2G145968 N 0.428
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.428
ENSSSCG00000025539 Sus scrofa ENSSSCG00000025539 I 0.427
bbx Danio rerio ENSDARG00000012699 I 0.427
GRMZM2G144398 Zea mays GRMZM2G144398 N 0.421
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.421
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.420
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.420
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.420
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.420
OS08G0101100 Oryza sativa OS08G0101100 I 0.420
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.420
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.420
AC186524.3_FG005 Zea mays AC186524.3_FG005 N 0.420
OBART08G00070 Oryza barthii OBART08G00070 I 0.420
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.420
Si014434m.g Setaria italica Si014434m.g N 0.418
Sb06g025440 Sorghum bicolor Sb06g025440 N 0.417
TELCIR_05566 Teladorsagia circumcincta TELCIR_05566 N 0.415
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.415