CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ONIVA02G29880
(
Oryza nivara
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ONIVA02G29880
T331644_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ONIVA02G29880.1
Sox
33
102
PKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFD
Links
Other
Sox
family TFs
Other
Oryza nivara
TFs
210 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ORUFI02G28820
Oryza rufipogon
ORUFI02G28820
N
0.741
OS02G0670400
Oryza sativa
OS02G0670400
N
0.741
OPUNC02G25020
Oryza punctata
OPUNC02G25020
N
0.741
OMERI02G26620
Oryza meridionalis
OMERI02G26620
N
0.741
OGLUM02G27900
Oryza glumaepatula
OGLUM02G27900
N
0.741
OBART02G27340
Oryza barthii
OBART02G27340
N
0.741
BGIOSGA008782
Oryza indica
BGIOSGA008782
N
0.741
OB02G34710
Oryza brachyantha
OB02G34710
N
0.741
BRADI3G51140
Brachypodium distachyon
BRADI3G51140
N
0.737
LPERR02G22240
Leersia perrieri
LPERR02G22240
N
0.729
GRMZM2G013821
Zea mays
GRMZM2G013821
N
0.724
Si018635m.g
Setaria italica
Si018635m.g
N
0.722
Pavir.J40489
Panicum virgatum
Pavir.J40489
N
0.699
Pavir.J38684
Panicum virgatum
Pavir.J38684
N
0.699
Sb04g032180
Sorghum bicolor
Sb04g032180
N
0.691
TRIUR3_34670
Triticum urartu
TRIUR3_34670
I
0.672
Traes_6DL_E5B5F44FC
Triticum aestivum
Traes_6DL_E5B5F44FC
I
0.672
Traes_6BL_017F7FCF8
Triticum aestivum
Traes_6BL_017F7FCF8
I
0.672
Traes_6AL_9EC9874F1
Triticum aestivum
Traes_6AL_9EC9874F1
I
0.672
F775_30706
Aegilops tauschii
F775_30706
I
0.672
GRMZM2G156785
Zea mays
GRMZM2G156785
N
0.660
GSMUA_Achr5G11630_001
Musa acuminata
GSMUA_Achr5G11630_001
I
0.632
MLOC_57633
Hordeum vulgare
MLOC_57633
I
0.617
GSMUA_Achr2G11060_001
Musa acuminata
GSMUA_Achr2G11060_001
I
0.597
GSMUA_Achr4G25860_001
Musa acuminata
GSMUA_Achr4G25860_001
I
0.544
VIT_13s0067g00640
Vitis vinifera
VIT_13s0067g00640
I
0.534
cassava24859.valid.m1
Manihot esculenta
cassava24859.valid.m1
I
0.513
AMTR_s00044p00160130
Amborella trichopoda
AMTR_s00044p00160130
I
0.513
Ciclev10026715m.g
Citrus clementina
Ciclev10026715m.g
I
0.511
evm.TU.supercontig_26.174
Carica papaya
evm.TU.supercontig_26.174
I
0.508
POPTR_0010s19720
Populus trichocarpa
POPTR_0010s19720
I
0.507
AMTR_s00029p00240750
Amborella trichopoda
AMTR_s00029p00240750
I
0.507
OLONG_000335
Oryza longistaminata
OLONG_000335
N
0.505
POPTR_0008s06730
Populus trichocarpa
POPTR_0008s06730
I
0.501
SapurV1A.0825s0160
Salix purpurea
SapurV1A.0825s0160
I
0.501
Ciclev10032930m.g
Citrus clementina
Ciclev10032930m.g
I
0.500
orange1.1g029982m.g
Citrus sinensis
orange1.1g029982m.g
I
0.500
orange1.1g031973m.g
Citrus sinensis
orange1.1g031973m.g
I
0.498
SapurV1A.0085s0030
Salix purpurea
SapurV1A.0085s0030
I
0.495
Bo5g030580
Brassica oleracea
Bo5g030580
I
0.494
Eucgr.F03571
Eucalyptus grandis
Eucgr.F03571
I
0.492
GSMUA_Achr10G07270_001
Musa acuminata
GSMUA_Achr10G07270_001
I
0.491
PGSC0003DMG400001567
Solanum tuberosum
PGSC0003DMG400001567
I
0.490
POPTR_0002s01000
Populus trichocarpa
POPTR_0002s01000
I
0.490
Solyc02g082700.2
Solanum lycopersicum
Solyc02g082700.2
I
0.490
TCM_034406
Theobroma cacao
TCM_034406
I
0.490
orange1.1g031906m.g
Citrus sinensis
orange1.1g031906m.g
I
0.490
Gorai.009G186800
Gossypium raimondii
Gorai.009G186800
I
0.490
cassava18624.valid.m1
Manihot esculenta
cassava18624.valid.m1
I
0.490
30170.m014386
Ricinus communis
30170.m014386
I
0.490
cassava35948.valid.m1
Manihot esculenta
cassava35948.valid.m1
I
0.490
cassava18625.valid.m1
Manihot esculenta
cassava18625.valid.m1
I
0.490
cassava18626.valid.m1
Manihot esculenta
cassava18626.valid.m1
I
0.490
gene13043-v1.0-hybrid
Fragaria vesca
gene13043-v1.0-hybrid
I
0.490
Cla009093
Citrullus lanatus
Cla009093
I
0.490
MDP0000275042
Malus domestica
MDP0000275042
I
0.490
Gorai.005G114500
Gossypium raimondii
Gorai.005G114500
I
0.490
Cucsa.323100
Cucumis sativus
Cucsa.323100
I
0.490
Gorai.002G115100
Gossypium raimondii
Gorai.002G115100
I
0.490
Ciclev10002782m.g
Citrus clementina
Ciclev10002782m.g
I
0.490
XM_002306945.1
Populus trichocarpa
POPTR_0005s27390
I
0.490
SapurV1A.0266s0310
Salix purpurea
SapurV1A.0266s0310
I
0.490
Thhalv10009371m.g
Eutrema salsugineum
Thhalv10009371m.g
I
0.490
POPTR_0005s10440
Populus trichocarpa
POPTR_0005s10440
I
0.488
Cucsa.067200
Cucumis sativus
Cucsa.067200
I
0.481
VIT_18s0122g01190
Vitis vinifera
VIT_18s0122g01190
I
0.480
cassava23716.valid.m1
Manihot esculenta
cassava23716.valid.m1
I
0.480
Pm018913
Prunus mume
Pm018913
I
0.480
PRUPE_ppa012424mg
Prunus persica
PRUPE_ppa012424mg
I
0.480
PDK_20s1306741g001
Phoenix dactylifera
PDK_20s1306741g001
I
0.480
Aquca_045_00054
Aquilegia coerulea
Aquca_045_00054
I
0.480
VIT_04s0044g00110
Vitis vinifera
VIT_04s0044g00110
I
0.480
MDP0000362980
Malus domestica
MDP0000362980
I
0.480
MDP0000757111
Malus domestica
MDP0000757111
I
0.480
29669.m000844
Ricinus communis
29669.m000844
I
0.478
Thhalv10009970m.g
Eutrema salsugineum
Thhalv10009970m.g
I
0.477
SapurV1A.0061s0170
Salix purpurea
SapurV1A.0061s0170
I
0.474
SapurV1A.2780s0020
Salix purpurea
SapurV1A.2780s0020
I
0.474
TCM_000068
Theobroma cacao
TCM_000068
I
0.473
Cla018386
Citrullus lanatus
Cla018386
I
0.470
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.470
GLYMA04G01840
Glycine max
GLYMA04G01840
I
0.469
Bo8g070350
Brassica oleracea
Bo8g070350
I
0.469
GLYMA16G22060
Glycine max
GLYMA16G22060
I
0.469
GLYMA06G01970
Glycine max
GLYMA06G01970
I
0.469
Bo7g061420
Brassica oleracea
Bo7g061420
I
0.469
GLYMA09G33070
Glycine max
GLYMA09G33070
I
0.469
GRMZM5G834758
Zea mays
GRMZM5G834758
I
0.468
MLOC_78556
Hordeum vulgare
MLOC_78556
I
0.468
TRIUR3_13577
Triticum urartu
TRIUR3_13577
I
0.468
Sb10g030910
Sorghum bicolor
Sb10g030910
I
0.468
F775_27510
Aegilops tauschii
F775_27510
I
0.468
OB06G35870
Oryza brachyantha
OB06G35870
I
0.468
BRADI1G29730
Brachypodium distachyon
BRADI1G29730
I
0.468
TCM_042534
Theobroma cacao
TCM_042534
I
0.467
Bra025838
Brassica rapa
Bra025838
I
0.467
SELMODRAFT_18313
Selaginella moellendorffii
SELMODRAFT_18313
I
0.466
SELMODRAFT_18312
Selaginella moellendorffii
SELMODRAFT_18312
I
0.466
GSMUA_Achr9G21200_001
Musa acuminata
GSMUA_Achr9G21200_001
I
0.464
GSMUA_AchrUn_randomG22010_001
Musa acuminata
GSMUA_AchrUn_randomG22010_001
I
0.464
GSMUA_Achr2G03630_001
Musa acuminata
GSMUA_Achr2G03630_001
I
0.464
GSMUA_Achr11G07320_001
Musa acuminata
GSMUA_Achr11G07320_001
I
0.464
TCM_021706
Theobroma cacao
TCM_021706
I
0.464
PRUPE_ppa011596mg
Prunus persica
PRUPE_ppa011596mg
I
0.463
PRUPE_ppa012972mg
Prunus persica
PRUPE_ppa012972mg
I
0.463
Pavir.Db00040
Panicum virgatum
Pavir.Db00040
I
0.461
OGLUM06G29480
Oryza glumaepatula
OGLUM06G29480
I
0.461
OS06G0728000
Oryza sativa
OS06G0728000
I
0.461
GRMZM2G066528
Zea mays
GRMZM2G066528
I
0.461
Pavir.Bb02550
Panicum virgatum
Pavir.Bb02550
I
0.461
OLONG_007465
Oryza longistaminata
OLONG_007465
I
0.461
Carubv10012681m.g
Capsella rubella
Carubv10012681m.g
I
0.461
Cagra.6160s0027
Capsella grandiflora
Cagra.6160s0027
I
0.461
Bostr.7128s0662
Boechera stricta
Bostr.7128s0662
I
0.461
SapurV1A.0016s0600
Salix purpurea
SapurV1A.0016s0600
I
0.461
HMGB3
Arabidopsis lyrata
fgenesh2_kg.1__2258__AT1G20696.3
I
0.461
ONIVA06G31070
Oryza nivara
ONIVA06G31070
I
0.461
ORUFI06G30030
Oryza rufipogon
ORUFI06G30030
I
0.461
Pm026798
Prunus mume
Pm026798
I
0.461
ORGLA06G0238300
Oryza glaberrima
ORGLA06G0238300
I
0.461
OPUNC06G25640
Oryza punctata
OPUNC06G25640
I
0.461
Pavir.J04920
Panicum virgatum
Pavir.J04920
I
0.461
OBART06G28090
Oryza barthii
OBART06G28090
I
0.461
LPERR06G23570
Leersia perrieri
LPERR06G23570
I
0.461
Pavir.Ba01379
Panicum virgatum
Pavir.Ba01379
I
0.461
OMERI06G28030
Oryza meridionalis
OMERI06G28030
I
0.461
SELMODRAFT_38818
Selaginella moellendorffii
SELMODRAFT_38818
I
0.461
Si031512m.g
Setaria italica
Si031512m.g
I
0.461
SELMODRAFT_175895
Selaginella moellendorffii
SELMODRAFT_175895
I
0.461
HMGB3
Arabidopsis thaliana
AT1G20696
I
0.461
Si007288m.g
Setaria italica
Si007288m.g
I
0.461
Sb02g032140
Sorghum bicolor
Sb02g032140
I
0.461
PK11149.1
Cannabis sativa
PK11149.1
I
0.457
mgf009330m
Mimulus guttatus
mgf009330m
I
0.456
PGSC0003DMG400018685
Solanum tuberosum
PGSC0003DMG400018685
I
0.454
MDP0000607529
Malus domestica
MDP0000607529
I
0.452
mgf014518m
Mimulus guttatus
mgf014518m
I
0.452
Aquca_015_00344
Aquilegia coerulea
Aquca_015_00344
I
0.451
Traes_5BL_9CC98DD38
Triticum aestivum
Traes_5BL_9CC98DD38
I
0.451
Traes_5DL_DD9491112
Triticum aestivum
Traes_5DL_DD9491112
I
0.451
BRADI4G37247
Brachypodium distachyon
BRADI4G37247
I
0.451
GSMUA_AchrUn_randomG05290_001
Musa acuminata
GSMUA_AchrUn_randomG05290_001
I
0.449
MTR_5g024180
Medicago truncatula
MTR_5g024180
I
0.449
Ca_09896
Cicer arietinum
Ca_09896
I
0.448
PRUPE_ppa007518mg
Prunus persica
PRUPE_ppa007518mg
I
0.447
Pm002934
Prunus mume
Pm002934
I
0.447
Gorai.002G263800
Gossypium raimondii
Gorai.002G263800
I
0.444
Lus10012252.g
Linum usitatissimum
Lus10012252.g
I
0.443
Lus10016025.g
Linum usitatissimum
Lus10016025.g
I
0.443
mgf006113m
Mimulus guttatus
mgf006113m
I
0.440
MTR_8g073345
Medicago truncatula
MTR_8g073345
I
0.440
mgf016608m
Mimulus guttatus
mgf016608m
I
0.440
mgf008076m
Mimulus guttatus
mgf008076m
I
0.440
Lus10028298.g
Linum usitatissimum
Lus10028298.g
I
0.439
HMGB1
Vitis vinifera
VIT_08s0007g02200
I
0.437
GLYMA01G28820
Glycine max
GLYMA01G28820
I
0.437
gene20487-v1.0-hybrid
Fragaria vesca
gene20487-v1.0-hybrid
I
0.437
cassava17389.m1
Manihot esculenta
cassava17389.m1
I
0.437
Eucgr.A00506
Eucalyptus grandis
Eucgr.A00506
I
0.437
chr1.CM0113.560.nc
Lotus japonicus
chr1.CM0113.560.nc
I
0.437
Cla023817
Citrullus lanatus
Cla023817
I
0.437
Cucsa.272190
Cucumis sativus
Cucsa.272190
I
0.437
PGSC0003DMG400008501
Solanum tuberosum
PGSC0003DMG400008501
I
0.437
Ca_10725
Cicer arietinum
Ca_10725
I
0.436
GRMZM2G144398
Zea mays
GRMZM2G144398
N
0.434
AC186524.3_FG005
Zea mays
AC186524.3_FG005
N
0.433
mgf000913m
Mimulus guttatus
mgf000913m
I
0.433
evm.TU.supercontig_365.4
Carica papaya
evm.TU.supercontig_365.4
I
0.432
TRIUR3_27273
Triticum urartu
TRIUR3_27273
I
0.432
LPERR09G14820
Leersia perrieri
LPERR09G14820
I
0.432
Aquca_004_00335
Aquilegia coerulea
Aquca_004_00335
I
0.432
evm.TU.supercontig_19.183
Carica papaya
evm.TU.supercontig_19.183
I
0.432
OB09G25530
Oryza brachyantha
OB09G25530
I
0.432
Lus10040192.g
Linum usitatissimum
Lus10040192.g
I
0.431
Eucgr.J02535
Eucalyptus grandis
Eucgr.J02535
I
0.431
evm.TU.supercontig_11.167
Carica papaya
evm.TU.supercontig_11.167
I
0.430
mgf016363m
Mimulus guttatus
mgf016363m
I
0.430
Ca_19340
Cicer arietinum
Ca_19340
I
0.430
PK29786.1
Cannabis sativa
PK29786.1
I
0.430
Gorai.006G181900
Gossypium raimondii
Gorai.006G181900
I
0.428
OS09G0551600
Oryza sativa
OS09G0551600
I
0.425
ONIVA09G20030
Oryza nivara
ONIVA09G20030
I
0.425
ORGLA09G0150800
Oryza glaberrima
ORGLA09G0150800
I
0.425
ORUFI09G20440
Oryza rufipogon
ORUFI09G20440
I
0.425
BGIOSGA023639
Oryza indica
BGIOSGA023639
I
0.425
OMERI09G14100
Oryza meridionalis
OMERI09G14100
I
0.425
Thhalv10022905m.g
Eutrema salsugineum
Thhalv10022905m.g
I
0.422
Bra037266
Brassica rapa
Bra037266
I
0.422
Bo7g014280
Brassica oleracea
Bo7g014280
I
0.422
GRMZM2G162284
Zea mays
GRMZM2G162284
I
0.421
Aquca_035_00040
Aquilegia coerulea
Aquca_035_00040
I
0.420
Pavir.Ga01019
Panicum virgatum
Pavir.Ga01019
N
0.419
Pavir.Gb00881
Panicum virgatum
Pavir.Gb00881
N
0.419
GRMZM2G145968
Zea mays
GRMZM2G145968
N
0.418
SNAPOd2T00000370001
Oikopleura dioica
SNAPOd2T00000370001
N
0.418
HMGB2
Arabidopsis thaliana
AT1G20693
I
0.418
gene20961-v1.0-hybrid
Fragaria vesca
gene20961-v1.0-hybrid
I
0.418
Cagra.6160s0028
Capsella grandiflora
Cagra.6160s0028
I
0.418
Carubv10010586m.g
Capsella rubella
Carubv10010586m.g
I
0.418
HMGB2
Arabidopsis lyrata
fgenesh2_kg.1__2255__AT1G20693.2
I
0.418
HMGB4
Arabidopsis lyrata
fgenesh2_kg.3__3350__AT2G17560.1
I
0.418
Carubv10014808m.g
Capsella rubella
Carubv10014808m.g
I
0.418
Bostr.7128s0663
Boechera stricta
Bostr.7128s0663
I
0.418
Cagra.1891s0017
Capsella grandiflora
Cagra.1891s0017
I
0.418
Bostr.18351s0219
Boechera stricta
Bostr.18351s0219
I
0.418
HMGB4
Arabidopsis thaliana
AT2G17560
I
0.416
OESDEN_24828
Oesophagostomum dentatum
OESDEN_24828
N
0.415
HCOI01913300
Haemonchus contortus
HCOI01913300
I
0.415
HCOI01912600
Haemonchus contortus
HCOI01912600
I
0.415
Gorai.013G018500
Gossypium raimondii
Gorai.013G018500
I
0.415