ONIVA08G00070 (Oryza nivara)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ONIVA08G00070 T331652_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.422 0.552
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA08G00070.1 Sox 92 159

Links

Other Sox family TFs
Other Oryza nivara TFs

240 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.741
OS08G0101100 Oryza sativa OS08G0101100 I 0.741
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.741
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.741
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.741
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.741
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.741
OBART08G00070 Oryza barthii OBART08G00070 I 0.741
OB08G10120 Oryza brachyantha OB08G10120 N 0.695
MDP0000205665 Malus domestica MDP0000205665 I 0.640
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.634
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.629
Pm006054 Prunus mume Pm006054 I 0.629
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.628
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.614
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.614
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.610
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.601
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.598
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.596
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.596
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.586
TCM_007659 Theobroma cacao TCM_007659 I 0.582
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.576
Si014434m.g Setaria italica Si014434m.g N 0.569
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.566
Bra029371 Brassica rapa Bra029371 I 0.563
Bo2g160920 Brassica oleracea Bo2g160920 I 0.563
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.557
PK03866.1 Cannabis sativa PK03866.1 I 0.551
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.546
Cla009222 Citrullus lanatus Cla009222 I 0.546
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.545
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.538
30131.m007272 Ricinus communis 30131.m007272 I 0.533
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.524
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.523
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.520
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.510
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.510
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.508
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.506
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.506
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.506
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.506
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.505
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.504
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.500
Bra026498 Brassica rapa Bra026498 I 0.499
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.499
Bo9g014140 Brassica oleracea Bo9g014140 I 0.499
TCM_042534 Theobroma cacao TCM_042534 I 0.495
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.494
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.493
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.488
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.488
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.485
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.483
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.483
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.483
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.483
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.482
GD25013 Drosophila simulans FBgn0196325 N 0.474
Ssrp Drosophila melanogaster FBgn0010278 N 0.474
GF12460 Drosophila ananassae FBgn0089497 N 0.474
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.473
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.472
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.472
mgf009124m Mimulus guttatus mgf009124m N 0.471
GG19998 Drosophila erecta FBgn0112197 N 0.469
GJ21774 Drosophila virilis FBgn0208892 N 0.469
GE11532 Drosophila yakuba FBgn0229332 N 0.469
GH21151 Drosophila grimshawi FBgn0128613 N 0.469
ENSOGAG00000034481 Otolemur garnettii ENSOGAG00000034481 N 0.469
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.465
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.464
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.464
HMGB7 Arabidopsis thaliana AT5G23420 N 0.462
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.462
HMEL015307 Heliconius melpomene HMEL015307 N 0.462
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.462
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.462
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.461
Bo7g061420 Brassica oleracea Bo7g061420 I 0.461
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.461
HMGB3 Arabidopsis thaliana AT1G20696 I 0.461
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.461
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.461
Pm026798 Prunus mume Pm026798 I 0.461
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.461
Bo8g070350 Brassica oleracea Bo8g070350 I 0.461
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.461
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.461
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.457
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.457
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.457
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.457
29669.m000844 Ricinus communis 29669.m000844 I 0.456
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.456
Bra025838 Brassica rapa Bra025838 I 0.456
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.455
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.455
mgf009330m Mimulus guttatus mgf009330m I 0.455
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.455
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.453
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.450
MDP0000362980 Malus domestica MDP0000362980 I 0.449
Pm018913 Prunus mume Pm018913 I 0.449
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.449
MDP0000757111 Malus domestica MDP0000757111 I 0.449
PK14705.1 Cannabis sativa PK14705.1 I 0.449
SPRG_10438 Saprolegnia parasitica SPRG_10438 N 0.448
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.445
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.445
MDP0000607529 Malus domestica MDP0000607529 I 0.445
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.443
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.443
mgf008076m Mimulus guttatus mgf008076m I 0.443
mgf016608m Mimulus guttatus mgf016608m I 0.443
mgf014518m Mimulus guttatus mgf014518m I 0.443
mgf006113m Mimulus guttatus mgf006113m I 0.443
mgf000913m Mimulus guttatus mgf000913m I 0.443
Ca_09896 Cicer arietinum Ca_09896 I 0.443
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.443
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.443
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.443
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.443
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.443
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.443
MDOA007633 Musca domestica MDOA007633 N 0.442
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.441
TCM_000068 Theobroma cacao TCM_000068 I 0.441
GI18750 Drosophila mojavensis FBgn0141489 N 0.440
AAEL002381 Aedes aegypti AAEL002381 N 0.440
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.439
Cla018386 Citrullus lanatus Cla018386 I 0.439
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.439
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.439
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.439
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.439
Cla009093 Citrullus lanatus Cla009093 I 0.438
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.438
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.437
Ca_05351 Cicer arietinum Ca_05351 I 0.437
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.436
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.436
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.434
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.434
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.434
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.433
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.433
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.433
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.432
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.432
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.432
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.432
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.432
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.432
30170.m014386 Ricinus communis 30170.m014386 I 0.432
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.432
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.432
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.432
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.432
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.432
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.431
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.430
KGM_13851 Danaus plexippus KGM_13851 N 0.430
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.430
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.429
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.429
Bo5g030580 Brassica oleracea Bo5g030580 I 0.429
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.429
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.429
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.429
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.429
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.428
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.428
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.428
HMGB1 Arabidopsis thaliana AT3G51880 I 0.428
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.428
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.428
MDP0000275042 Malus domestica MDP0000275042 I 0.427
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.427
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.427
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.427
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.427
BRADI5G18460 Brachypodium distachyon BRADI5G18460 N 0.427
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.427
TCM_034406 Theobroma cacao TCM_034406 I 0.427
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.427
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.427
GL11071 Drosophila persimilis FBgn0148681 N 0.427
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.425
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.425
OB09G25530 Oryza brachyantha OB09G25530 I 0.425
Si031512m.g Setaria italica Si031512m.g I 0.425
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.425
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.425
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.425
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.425
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.425
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.425
Bo7g101270 Brassica oleracea Bo7g101270 I 0.424
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.423
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.423
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.423
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.422
HMG-1 Pisum sativum Q41026_PEA D 0.422
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.421
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.421
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.421
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.421
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.420
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.420
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.420
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.420
L798_13679 Zootermopsis nevadensis L798_13679 N 0.420
OB04G28810 Oryza brachyantha OB04G28810 N 0.420
OBART04G21800 Oryza barthii OBART04G21800 N 0.420
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.420
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.420
OS04G0564600 Oryza sativa OS04G0564600 N 0.420
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.420
ENSMEUG00000004078 Macropus eugenii ENSMEUG00000004078 N 0.419
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.418
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.418
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.418
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.418
HMGB2 Arabidopsis thaliana AT1G20693 I 0.418
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.418
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.418
OS09G0551600 Oryza sativa OS09G0551600 I 0.418
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.418
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.418
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.416
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.416
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.416
Bo8g081200 Brassica oleracea Bo8g081200 I 0.416
ACEP16621 Atta cephalotes ACEP16621 N 0.416
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.415