OPUNC02G09900 (Oryza punctata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OPUNC02G09900 T331655_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.421 0.579
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.421 0.579
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OPUNC02G09900.1 Sox 155 220
OPUNC02G09900.1 Sox 277 343
OPUNC02G09900.1 Sox 406 474

Links

Other Sox family TFs
Other Oryza punctata TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.732
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.732
OBART02G11160 Oryza barthii OBART02G11160 I 0.732
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.732
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.732
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.720
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.700
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.634
OB02G19930 Oryza brachyantha OB02G19930 N 0.623
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.609
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.602
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.581
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.580
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.567
Si017040m.g Setaria italica Si017040m.g I 0.565
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.555
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.543
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.499
mgf015439m Mimulus guttatus mgf015439m I 0.487
F775_10696 Aegilops tauschii F775_10696 N 0.459
OS02G0258200 Oryza sativa OS02G0258200 N 0.456
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.449
Pm024077 Prunus mume Pm024077 I 0.449
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.448
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.440
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.437
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.428
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.427
HMGB13 Arabidopsis thaliana AT4G11080 D 0.421
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.420
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.420
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.418
TCM_016416 Theobroma cacao TCM_016416 I 0.418