ORUFI09G20440 (Oryza rufipogon)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ORUFI09G20440 T331698_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.607 0.652
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI09G20440.1 Sox 28 97
ORUFI09G20440.2 Sox 28 97

Links

Other Sox family TFs
Other Oryza rufipogon TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.741
OS09G0551600 Oryza sativa OS09G0551600 I 0.741
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.741
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.741
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.735
OB09G25530 Oryza brachyantha OB09G25530 I 0.735
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.706
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.706
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.696
Si031512m.g Setaria italica Si031512m.g I 0.696
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.696
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.696
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.687
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.672
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.665
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.665
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.660
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.656
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.655
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.650
TCM_000068 Theobroma cacao TCM_000068 I 0.650
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.648
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.648
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.648
mgf009330m Mimulus guttatus mgf009330m I 0.645
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.642
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.638
Pm026798 Prunus mume Pm026798 I 0.637
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.637
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.636
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.636
Cla009093 Citrullus lanatus Cla009093 I 0.633
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.633
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.633
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.633
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.630
MDP0000757111 Malus domestica MDP0000757111 I 0.630
MDP0000275042 Malus domestica MDP0000275042 I 0.630
MDP0000362980 Malus domestica MDP0000362980 I 0.630
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.630
30170.m014386 Ricinus communis 30170.m014386 I 0.630
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.630
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.630
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.630
Pm018913 Prunus mume Pm018913 I 0.630
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.627
mgf016363m Mimulus guttatus mgf016363m I 0.627
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.627
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.627
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.627
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.627
TCM_034406 Theobroma cacao TCM_034406 I 0.627
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.626
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.626
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.623
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.623
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.623
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.623
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.620
HMGB3 Arabidopsis thaliana AT1G20696 I 0.620
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.620
Bo8g070350 Brassica oleracea Bo8g070350 I 0.620
Bo7g061420 Brassica oleracea Bo7g061420 I 0.620
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.620
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.620
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.620
Bra025838 Brassica rapa Bra025838 I 0.620
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.620
mgf014518m Mimulus guttatus mgf014518m I 0.619
MDP0000607529 Malus domestica MDP0000607529 I 0.617
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.616
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.616
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.614
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.614
mgf006113m Mimulus guttatus mgf006113m I 0.613
mgf008076m Mimulus guttatus mgf008076m I 0.613
mgf016608m Mimulus guttatus mgf016608m I 0.613
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.610
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.610
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.610
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.609
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.609
29669.m000844 Ricinus communis 29669.m000844 I 0.609
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.609
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.608
Ca_09896 Cicer arietinum Ca_09896 I 0.608
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.608
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.608
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.608
HMGB1 Arabidopsis thaliana AT3G51880 I 0.608
Bo7g101270 Brassica oleracea Bo7g101270 I 0.608
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.607
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.607
HMG-1 Pisum sativum Q41026_PEA D 0.607
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.607
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.605
Ca_19340 Cicer arietinum Ca_19340 I 0.600
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.600
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.600
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.600
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.600
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.600
Si007288m.g Setaria italica Si007288m.g I 0.598
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.598
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.598
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.598
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.598
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.598
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.598
OBART06G28090 Oryza barthii OBART06G28090 I 0.598
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.598
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.598
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.598
OS06G0728000 Oryza sativa OS06G0728000 I 0.598
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.598
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.597
Bo8g081200 Brassica oleracea Bo8g081200 I 0.596
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.596
TCM_042534 Theobroma cacao TCM_042534 I 0.596
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.595
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.594
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.594
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.594
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.594
HMGB2 Arabidopsis thaliana AT1G20693 I 0.594
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.594
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.594
Bo5g030580 Brassica oleracea Bo5g030580 I 0.593
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.593
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.593
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.593
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.592
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.591
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.591
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.591
OB06G35870 Oryza brachyantha OB06G35870 I 0.591
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.590
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.590
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.588
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.587
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.586
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.585
F775_27510 Aegilops tauschii F775_27510 I 0.585
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.585
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.584
Bo7g014280 Brassica oleracea Bo7g014280 I 0.584
Pm002934 Prunus mume Pm002934 I 0.583
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.583
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.583
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.583
PK29786.1 Cannabis sativa PK29786.1 I 0.582
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.579
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.577
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.577
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.577
Bra002073 Brassica rapa Bra002073 I 0.576
PK11149.1 Cannabis sativa PK11149.1 I 0.573
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.572
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.572
Bra011624 Brassica rapa Bra011624 I 0.572
Bra017723 Brassica rapa Bra017723 I 0.572
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.572
Bo7g117500 Brassica oleracea Bo7g117500 I 0.572
Bo1g006360 Brassica oleracea Bo1g006360 I 0.572
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.572
HMGB4 Arabidopsis thaliana AT2G17560 I 0.572
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.571
mgf000913m Mimulus guttatus mgf000913m I 0.571
Cla018386 Citrullus lanatus Cla018386 I 0.570
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.570
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.570
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.570
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.569
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.568
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.568
Cla023817 Citrullus lanatus Cla023817 I 0.568
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.568
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.568
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.568
Ca_10725 Cicer arietinum Ca_10725 I 0.565
TCM_021706 Theobroma cacao TCM_021706 I 0.560
Bra037266 Brassica rapa Bra037266 I 0.559
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.559
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.556
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.556
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.556
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.556
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.555
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.555
29701.m000600 Ricinus communis 29701.m000600 I 0.549
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.548
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.547
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.547
Ca_04825 Cicer arietinum Ca_04825 I 0.547
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.546
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.542
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.539
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.539
Ca_05351 Cicer arietinum Ca_05351 I 0.535
29600.m000548 Ricinus communis 29600.m000548 I 0.535
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.528
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.526
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.526
PK14705.1 Cannabis sativa PK14705.1 I 0.522
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.517
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.517
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.516
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.514
Traes_5AL_D1358AF6E Triticum aestivum Traes_5AL_D1358AF6E I 0.510
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.508
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.507
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.502
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.502
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.488
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.488
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.484
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.484
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.482
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.482
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.482
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.480
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.480
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.478
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.467
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.465
HMGB5 Arabidopsis thaliana AT4G35570 I 0.450
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.445
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.443
PK27241.1 Cannabis sativa PK27241.1 I 0.437
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.434
Eucgr.H01676 Eucalyptus grandis Eucgr.H01676 I 0.431
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.427
OB02G34710 Oryza brachyantha OB02G34710 N 0.425
OBART02G27340 Oryza barthii OBART02G27340 N 0.425
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.425
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.425
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.425
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.425
OS02G0670400 Oryza sativa OS02G0670400 N 0.425
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.425
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.425
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.425
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.424
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.424
Cla009222 Citrullus lanatus Cla009222 I 0.424
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.424
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.420
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.420
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.420
SSRP1 Arabidopsis thaliana AT3G28730 I 0.420
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.420
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.420
OB08G10120 Oryza brachyantha OB08G10120 N 0.418
TCM_007659 Theobroma cacao TCM_007659 I 0.418
EMIHUDRAFT_59608 Emiliania huxleyi EMIHUDRAFT_59608 N 0.418
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.418
OBART08G00070 Oryza barthii OBART08G00070 I 0.418
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.418
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.418
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.418
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.418
OS08G0101100 Oryza sativa OS08G0101100 I 0.418
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.418
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.418
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.418
Hsal_13112--XP_624266.1_APIME Harpegnathos saltator Hsal_13112--XP_624266.1_APIME N 0.417
GB47837 Apis mellifera GB47837 N 0.417
SINV22588 Solenopsis invicta SINV22588 N 0.417
Cflo_05893--XP_624266.1_APIME Camponotus floridanus Cflo_05893--XP_624266.1_APIME N 0.417