PAN0_004d2231 (Pseudozyma antarctica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PAN0_004d2231 T331752_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NHP6B
M01565_2.00
Saccharomyces cerevisiae
NNWHWRYDNN

NNHRYWDWNN
PBM
Zhu et al.(2009)
Nhp6b
0.503 0.507
NHP6A
M01566_2.00
Saccharomyces cerevisiae
NHRYWWWN

NWWWRYDN
PBM
Zhu et al.(2009)
Nhp6a
0.503 0.507
NHP6B
M08603_2.00
Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN

NHNYWWWWTATAWWNDDAND
Misc
DeBoer et al.(2011)
YBR089C-A_792
0.503 0.507
NHP6A
M08606_2.00
Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN

NHNNHYWHTATATAWNNDHNH
Misc
DeBoer et al.(2011)
YPR052C_879
0.503 0.507
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GAK64022 Sox 181 249

Links

Other Sox family TFs
Other Pseudozyma antarctica TFs

346 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ALNC14_032430 Albugo laibachii ALNC14_032430 N 0.000
estExt_Genewise1Plus.C_30071 Phytophthora capsici estExt_Genewise1Plus.C_30071 N 0.000
F443_17719 Phytophthora parasitica F443_17719 N 0.000
fgenesh_masked-pag1_scaffold_1-abinit-gene-1.110 Pythium aphanidermatum fgenesh_masked-pag1_scaffold_1-abinit-gene-1.110 N 0.000
fgenesh_scip_prom.46568.9728 Phytophthora kernoviae fgenesh_scip_prom.46568.9728 N 0.000
HpaG813721 Hyaloperonospora arabidopsidis HpaG813721 N 0.000
maker-pir_contig_920-fgenesh-gene-0.2 Pythium irregulare maker-pir_contig_920-fgenesh-gene-0.2 N 0.000
maker-piw_contig_412-fgenesh-gene-0.6 Pythium iwayamai maker-piw_contig_412-fgenesh-gene-0.6 N 0.000
maker-pve_contig_833-fgenesh-gene-0.1 Pythium vexans maker-pve_contig_833-fgenesh-gene-0.1 N 0.000
Phyra44780 Phytophthora ramorum Phyra44780 N 0.000
Physo111770 Phytophthora sojae Physo111770 N 0.000
PITG_07312 Phytophthora infestans PITG_07312 N 0.000
PYU1_G013989 Pythium ultimum PYU1_G013989 N 0.000
SPRG_03180 Saprolegnia parasitica SPRG_03180 N 0.000