CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PAXRUDRAFT_821077
(
Paxillus rubicundulus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
PAXRUDRAFT_821077
T331781_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CRC
M07266_2.00
Arabidopsis thaliana
TWATCATW
WATGATWA
Dap-seq
OMalley et al.(2016)
CRC_col_a
0.427
0.375
CRC
M07267_2.00
Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC
Dap-seq
OMalley et al.(2016)
CRC_colamp_a
0.427
0.375
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KIL01061
Sox
26
73
RKKLSAFNKFMQAEMARLKDSEPDIPHQERFKLATANWKTAKENPRAA
Links
Other
Sox
family TFs
Other
Paxillus rubicundulus
TFs
125 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy