CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PCHAS_072200
(
Plasmodium chabaudi
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
PCHAS_072200
T331796_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NHP6A
M01566_2.00
Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN
PBM
Zhu et al.(2009)
Nhp6a
0.436
0.522
NHP6A
M08606_2.00
Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH
Misc
DeBoer et al.(2011)
YPR052C_879
0.436
0.522
NHP6B
M01565_2.00
Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN
PBM
Zhu et al.(2009)
Nhp6b
0.430
0.478
NHP6B
M08603_2.00
Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND
Misc
DeBoer et al.(2011)
YBR089C-A_792
0.430
0.478
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PCHAS_072200:pep
Sox
24
94
PKRALSAYMFYVKDKRLEIIQERPELAKEVAQVGKLIGEAWGQLTPAQKAPYEKKAELDKVRYSKEIEEYK
Links
Other
Sox
family TFs
Other
Plasmodium chabaudi
TFs
94 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PBANKA_071290
Plasmodium berghei
PBANKA_071290
I
0.708
PY07077
Plasmodium yoelii
PY07077
I
0.708
PVX_089520
Plasmodium vivax
PVX_089520
I
0.683
MAL8P1.72
Plasmodium falciparum
MAL8P1.72
I
0.662
PKH_051400
Plasmodium knowlesi
PKH_051400
I
0.651
YALI0_C11671g
Yarrowia lipolytica
YALI0_C11671g
I
0.511
PFL0145c
Plasmodium falciparum
PFL0145c
I
0.497
PCHAS_060370
Plasmodium chabaudi
PCHAS_060370
I
0.497
PBANKA_060190
Plasmodium berghei
PBANKA_060190
I
0.497
PY05184
Plasmodium yoelii
PY05184
I
0.497
AAA27799.1
Babesia bovis
AAA27799.1
I
0.496
CBF60306.1
Babesia bovis
CBF60306.1
I
0.496
CBF61316.1
Babesia bovis
CBF61316.1
I
0.496
CBV00234.1
Babesia bovis
CBV00234.1
I
0.496
EDO05788.1
Babesia bovis
EDO05788.1
I
0.496
CBU86344.1
Babesia bovis
CBU86344.1
I
0.496
CBU86735.1
Babesia bovis
CBU86735.1
I
0.496
CBF82108.1
Babesia bovis
CBF82108.1
I
0.496
CBF61859.1
Babesia bovis
CBF61859.1
I
0.496
CBU85550.1
Babesia bovis
CBU85550.1
I
0.496
TP03_0469
Theileria parva
TP03_0469
I
0.494
TA04735
Theileria annulata
TA04735
I
0.489
PVX_084190
Plasmodium vivax
PVX_084190
I
0.488
PKH_130170
Plasmodium knowlesi
PKH_130170
I
0.488
CANTEDRAFT_110112
Candida tenuis
CANTEDRAFT_110112
I
0.471
orange1.1g044275m.g
Citrus sinensis
orange1.1g044275m.g
I
0.464
TGME49_010410
Toxoplasma gondii
TGME49_010410
I
0.457
NCLIV_043670
Neospora caninum
NCLIV_043670
I
0.457
PGUG_05245
Meyerozyma guilliermondii
PGUG_05245
I
0.456
PGUG_05245
Candida guilliermondii
PGUG_05245
I
0.456
ZYRO0C15752g
Zygosaccharomyces rouxii
ZYRO0C15752g
I
0.443
ZBAI_05520
Zygosaccharomyces bailii
ZBAI_05520
I
0.443
ZBAI_00368
Zygosaccharomyces bailii
ZBAI_00368
I
0.443
TDEL_0C04750
Torulaspora delbrueckii
TDEL_0C04750
I
0.443
Kpol_376p1
Vanderwaltozyma polyspora
Kpol_376p1
I
0.443
Kpol_1065p34
Vanderwaltozyma polyspora
Kpol_1065p34
I
0.443
ATHMG
Vitis vinifera
VIT_14s0108g00040
I
0.441
Carubv10016819m.g
Capsella rubella
Carubv10016819m.g
I
0.439
SSRP1
Arabidopsis thaliana
AT3G28730
I
0.439
Cagra.0535s0005
Capsella grandiflora
Cagra.0535s0005
I
0.439
CNF04730
Cryptococcus neoformans
CNF04730
I
0.437
PTRK_0001490800
Parastrongyloides trichosuri
PTRK_0001490800
N
0.437
L804_02852
Cryptococcus gattii
L804_02852
I
0.437
Ecym_7459
Eremothecium cymbalariae
Ecym_7459
I
0.436
KLLA0_B12056g
Kluyveromyces lactis
KLLA0_B12056g
I
0.436
AACERI_AaceriADL310W
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriADL310W
I
0.436
AGOS_ADL310W
Ashbya gossypii
AGOS_ADL310W
I
0.436
SAKL0B07150g
Lachancea kluyveri
SAKL0B07150g
I
0.436
KLTH0E14850g
Kluyveromyces thermotolerans
KLTH0E14850g
I
0.436
Kwal_12539
Kluyveromyces waltii
Kwal_12539
I
0.436
NHP6A
Saccharomyces cerevisiae
YPR052C
D
0.436
25751_YPR052C
Saccharomyces bayanus
25751_YPR052C
I
0.436
LALA0_S09e03686g
Lachancea lanzarotensis
LALA0_S09e03686g
I
0.436
KLTH0E14850g
Lachancea thermotolerans
KLTH0E14850g
I
0.436
SU7_3651
Saccharomyces arboricola
SU7_3651
I
0.436
22477_YPR052C
Saccharomyces mikatae
22477_YPR052C
I
0.436
TBLA_0I02240
Tetrapisispora blattae
TBLA_0I02240
I
0.436
SKUD_180604
Saccharomyces kudriavzevii
SKUD_180604
I
0.436
Thhalv10003803m.g
Eutrema salsugineum
Thhalv10003803m.g
I
0.434
NDAI_0A05290
Naumovozyma dairenensis
NDAI_0A05290
I
0.433
2032_YBR089C-A
Saccharomyces bayanus
2032_YBR089C-A
I
0.430
1377_YBR089C-A
Saccharomyces paradoxus
1377_YBR089C-A
I
0.430
SKUD_201106
Saccharomyces kudriavzevii
SKUD_201106
I
0.430
Scas_Contig667.17
Saccharomyces castellii
Scas_Contig667.17
I
0.430
NHP6B
Saccharomyces cerevisiae
YBR089C-A
D
0.430
NCAS_0A11010
Naumovozyma castellii
NCAS_0A11010
I
0.430
906_YBR089C-A
Saccharomyces mikatae
906_YBR089C-A
I
0.430
SU7_0186
Saccharomyces arboricola
SU7_0186
I
0.430
EVEC_0000171701
Enterobius vermicularis
EVEC_0000171701
N
0.428
MDP0000828844
Malus domestica
MDP0000828844
I
0.428
MDP0000301546
Malus domestica
MDP0000301546
I
0.428
NV15871
Nasonia vitripennis
NV15871
N
0.427
MDP0000310093
Malus domestica
MDP0000310093
I
0.426
E5Q_00406
Mixia osmundae
E5Q_00406
I
0.426
Pm015842
Prunus mume
Pm015842
I
0.424
PV09_01265
Verruconis gallopava
PV09_01265
I
0.424
CAGL0H08541g
Candida glabrata
CAGL0H08541g
I
0.424
PRUPE_ppa002690mg
Prunus persica
PRUPE_ppa002690mg
I
0.424
evm.TU.supercontig_211.6
Carica papaya
evm.TU.supercontig_211.6
I
0.422
EDP44509.1
Malassezia globosa
EDP44509.1
N
0.421
SEPMUDRAFT_150255
Sphaerulina musiva
SEPMUDRAFT_150255
I
0.420
ANIA_02885
Aspergillus nidulans
CADANIAG00010204
I
0.420
PDK_20s1437671g003
Phoenix dactylifera
PDK_20s1437671g003
I
0.420
KUCA_T00001555001
Kuraishia capsulata
KUCA_T00001555001
I
0.418
gww1.1.1.1342.1
Pichia stipitis
gww1.1.1.1342.1
I
0.418
HPODL_03671
Ogataea parapolymorpha
HPODL_03671
I
0.418
PICST_23779
Scheffersomyces stipitis
PICST_23779
I
0.418
GNLVRS01_PISO0M04390g
Millerozyma farinosa
GNLVRS01_PISO0M04390g
I
0.418
G210_1137
Candida maltosa
G210_1137
I
0.418
SPAPADRAFT_62621
Spathaspora passalidarum
SPAPADRAFT_62621
I
0.418
OSTLU_31946
Ostreococcus lucimarinus
OSTLU_31946
I
0.418
TPHA_0M01480
Tetrapisispora phaffii
TPHA_0M01480
I
0.417
mgf014518m
Mimulus guttatus
mgf014518m
I
0.417
TPHA_0A03740
Tetrapisispora phaffii
TPHA_0A03740
I
0.416