TF Information

PGSC0003DMG400008501 *(Solanum tuberosum)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00505 (HMG_box)	IPR000910	PGSC0003DMG400008501	T331846_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HMG-1 M02720_2.00	Pisum sativum	STYGTDHTY	RADHACRAS	SELEX Mathelier et al.(2014) MA0044.1	0.461	0.569
NHP6A M01566_2.00	Saccharomyces cerevisiae	NHRYWWWN	NWWWRYDN	PBM Zhu et al.(2009) Nhp6a	0.434	0.464
NHP6A M08606_2.00	Saccharomyces cerevisiae	DNDHNNWTATATADWRDNNDN	NHNNHYWHTATATAWNNDHNH	Misc DeBoer et al.(2011) YPR052C_879	0.434	0.464
NHP6B M01565_2.00	Saccharomyces cerevisiae	NNWHWRYDNN	NNHRYWDWNN	PBM Zhu et al.(2009) Nhp6b	0.434	0.449
NHP6B M08603_2.00	Saccharomyces cerevisiae	HNTHHNWWTATAWWWWRNDN	NHNYWWWWTATAWWNDDAND	Misc DeBoer et al.(2011) YBR089C-A_792	0.434	0.449
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
PGSC0003DMT400021915	Sox	53	111	PKRPPSAFFVFLEEFRKTFKKENPNVKAVSAVGKAGGEKWKSLSAAGEEEEEDDEDEED
PGSC0003DMT400021916	Sox	53	122	PKRPPSAFFVFLEEFRKTFKKENPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKAAKRKAEYGKLMNAYN
PGSC0003DMT400021917	Sox	53	122	PKRPPSAFFVFLEEFRKTFKKENPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKAAKRKAEYGKLMNAYN
PGSC0003DMT400021918	Sox	53	122	PKRPPSAFFVFLEEFRKTFKKENPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKAAKRKAEYGKLMNAYN

Links
Other Sox family TFs
Other *Solanum tuberosum* TFs

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393 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action