PGSC0003DMG400012298 (Solanum tuberosum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PGSC0003DMG400012298 T331848_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.461 0.678
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.461 0.678
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400032048 Sox 176 240
PGSC0003DMT400032048 Sox 293 360
PGSC0003DMT400032048 Sox 421 489
PGSC0003DMT400032049 Sox 176 240
PGSC0003DMT400032049 Sox 293 360
PGSC0003DMT400032049 Sox 421 462

Links

Other Sox family TFs
Other Solanum tuberosum TFs

Invalid Input OrderBy

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action