CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400025304
(
Solanum tuberosum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
PGSC0003DMG400025304
T331855_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.505
0.623
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400065103
Sox
111
180
PKRPPTAFFVFMDDFRQEFKAANPDCKSVSTVAKEGGEKWKSMTDEEKKPYQEKAAELKAAYEKALKSNT
PGSC0003DMT400065104
Sox
111
179
PKRPPTAFFVFMDDFRQEFKAANPDCKSVSTVAKEGGEKWKSMTDEEKKPYQEKAAELKAAYEKALKSN
Links
Other
Sox
family TFs
Other
Solanum tuberosum
TFs
246 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc04g008820.2
Solanum lycopersicum
Solyc04g008820.2
I
0.689
Pm006054
Prunus mume
Pm006054
I
0.610
PRUPE_ppa026912mg
Prunus persica
PRUPE_ppa026912mg
I
0.610
SapurV1A.0766s0120
Salix purpurea
SapurV1A.0766s0120
I
0.593
MDP0000205665
Malus domestica
MDP0000205665
I
0.591
orange1.1g026850m.g
Citrus sinensis
orange1.1g026850m.g
N
0.588
Ciclev10016587m.g
Citrus clementina
Ciclev10016587m.g
N
0.588
30131.m007272
Ricinus communis
30131.m007272
I
0.574
Cla009222
Citrullus lanatus
Cla009222
I
0.566
Cucsa.300030
Cucumis sativus
Cucsa.300030
I
0.566
HMGB6
Vitis vinifera
VIT_10s0071g00870
I
0.562
Bra026498
Brassica rapa
Bra026498
I
0.560
Bo9g014140
Brassica oleracea
Bo9g014140
I
0.560
TCM_007659
Theobroma cacao
TCM_007659
I
0.559
Bo2g160920
Brassica oleracea
Bo2g160920
I
0.556
Bra029371
Brassica rapa
Bra029371
I
0.556
HMGB6
Populus trichocarpa
POPTR_0007s15320
I
0.555
Carubv10001858m.g
Capsella rubella
Carubv10001858m.g
I
0.550
Cagra.0086s0060
Capsella grandiflora
Cagra.0086s0060
I
0.550
Bostr.10199s0131
Boechera stricta
Bostr.10199s0131
N
0.550
Si014434m.g
Setaria italica
Si014434m.g
N
0.546
OGLUM08G00090
Oryza glumaepatula
OGLUM08G00090
I
0.545
OBART08G00070
Oryza barthii
OBART08G00070
I
0.545
BGIOSGA027814
Oryza indica
BGIOSGA027814
I
0.545
ORUFI08G00080
Oryza rufipogon
ORUFI08G00080
I
0.545
OLONG_014445
Oryza longistaminata
OLONG_014445
I
0.545
OPUNC08G00150
Oryza punctata
OPUNC08G00150
I
0.545
ONIVA08G00070
Oryza nivara
ONIVA08G00070
I
0.545
BGIOSGA027819
Oryza indica
BGIOSGA027819
I
0.545
OS08G0101100
Oryza sativa
OS08G0101100
I
0.545
Gorai.008G147700
Gossypium raimondii
Gorai.008G147700
I
0.544
mgf009124m
Mimulus guttatus
mgf009124m
N
0.541
Thhalv10004817m.g
Eutrema salsugineum
Thhalv10004817m.g
N
0.537
Eucgr.J00336
Eucalyptus grandis
Eucgr.J00336
I
0.535
AMTR_s00171p00070550
Amborella trichopoda
AMTR_s00171p00070550
I
0.533
evm.TU.supercontig_247.1
Carica papaya
evm.TU.supercontig_247.1
N
0.532
OB08G10120
Oryza brachyantha
OB08G10120
N
0.527
GLYMA20G23370
Glycine max
GLYMA20G23370
I
0.519
chr5.CM0180.220.nd
Lotus japonicus
chr5.CM0180.220.nd
I
0.519
Sb07g000230
Sorghum bicolor
Sb07g000230
N
0.513
Pavir.J10680
Panicum virgatum
Pavir.J10680
N
0.511
PK03866.1
Cannabis sativa
PK03866.1
I
0.509
GRMZM2G125648
Zea mays
GRMZM2G125648
N
0.509
HMG-1
Pisum sativum
Q41026_PEA
D
0.505
Ca_05351
Cicer arietinum
Ca_05351
I
0.499
MTR_3g115580
Medicago truncatula
MTR_3g115580
I
0.498
Lus10041009.g
Linum usitatissimum
Lus10041009.g
N
0.496
GLYMA10G43440
Glycine max
GLYMA10G43440
I
0.489
Carubv10010586m.g
Capsella rubella
Carubv10010586m.g
I
0.488
HMGB2
Arabidopsis lyrata
fgenesh2_kg.1__2255__AT1G20693.2
I
0.488
HMGB2
Arabidopsis thaliana
AT1G20693
I
0.488
Bostr.7128s0663
Boechera stricta
Bostr.7128s0663
I
0.488
Cagra.6160s0028
Capsella grandiflora
Cagra.6160s0028
I
0.488
PDK_20s1709771g002
Phoenix dactylifera
PDK_20s1709771g002
N
0.484
LjT35D08.150.nd
Lotus japonicus
LjT35D08.150.nd
I
0.484
MTR_7g068280
Medicago truncatula
MTR_7g068280
I
0.484
MTR_1g115220
Medicago truncatula
MTR_1g115220
I
0.483
OSTLU_15773
Ostreococcus lucimarinus
OSTLU_15773
N
0.483
PK11149.1
Cannabis sativa
PK11149.1
I
0.483
cassava23716.valid.m1
Manihot esculenta
cassava23716.valid.m1
I
0.481
PPAI002521
Phlebotomus papatasi
PPAI002521
N
0.478
Thhalv10010751m.g
Eutrema salsugineum
Thhalv10010751m.g
I
0.477
GLYMA01G28820
Glycine max
GLYMA01G28820
I
0.476
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.476
Lus10028298.g
Linum usitatissimum
Lus10028298.g
I
0.473
chr1.CM0113.560.nc
Lotus japonicus
chr1.CM0113.560.nc
I
0.472
MDOA007633
Musca domestica
MDOA007633
N
0.472
PDK_20s1355261g001
Phoenix dactylifera
PDK_20s1355261g001
N
0.472
AMAG_02260
Allomyces macrogynus
AMAG_02260
N
0.472
AMAG_00757
Allomyces macrogynus
AMAG_00757
N
0.472
GSMUA_AchrUn_randomG05290_001
Musa acuminata
GSMUA_AchrUn_randomG05290_001
I
0.472
Bo7g101270
Brassica oleracea
Bo7g101270
I
0.471
Cagra.1043s0022
Capsella grandiflora
Cagra.1043s0022
I
0.471
HMGB1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001281
I
0.471
Bostr.6864s0060
Boechera stricta
Bostr.6864s0060
I
0.471
HMGB1
Arabidopsis thaliana
AT3G51880
I
0.471
cassava1392.valid.m1
Manihot esculenta
cassava1392.valid.m1
I
0.469
Gorai.002G263800
Gossypium raimondii
Gorai.002G263800
I
0.469
BGIOSGA023639
Oryza indica
BGIOSGA023639
I
0.467
Pm002934
Prunus mume
Pm002934
I
0.466
PRUPE_ppa007518mg
Prunus persica
PRUPE_ppa007518mg
I
0.466
fgeneshCV_pg.C_scaffold_4000123
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_4000123
N
0.465
fgenesh1_pg.4_#_114
Coccomyxa subellipsoidea C169
fgenesh1_pg.4_#_114
N
0.465
Bo8g081200
Brassica oleracea
Bo8g081200
I
0.465
Ca_19340
Cicer arietinum
Ca_19340
I
0.465
Lus10040192.g
Linum usitatissimum
Lus10040192.g
I
0.465
SELMODRAFT_38818
Selaginella moellendorffii
SELMODRAFT_38818
I
0.463
SELMODRAFT_175895
Selaginella moellendorffii
SELMODRAFT_175895
I
0.463
Lus10016025.g
Linum usitatissimum
Lus10016025.g
I
0.462
Lus10012252.g
Linum usitatissimum
Lus10012252.g
I
0.462
Gorai.006G181900
Gossypium raimondii
Gorai.006G181900
I
0.461
AMTR_s00046p00227790
Amborella trichopoda
AMTR_s00046p00227790
N
0.459
Carubv10018109m.g
Capsella rubella
Carubv10018109m.g
I
0.459
LDEC020995
Leptinotarsa decemlineata
LDEC020995
N
0.459
scaffold_602413.1
Arabidopsis lyrata
scaffold_602413.1
N
0.458
GSMUA_AchrUn_randomG22010_001
Musa acuminata
GSMUA_AchrUn_randomG22010_001
I
0.458
GSMUA_Achr11G07320_001
Musa acuminata
GSMUA_Achr11G07320_001
I
0.458
HMGB7
Arabidopsis thaliana
AT5G23420
N
0.458
Bra002073
Brassica rapa
Bra002073
I
0.457
Thhalv10009970m.g
Eutrema salsugineum
Thhalv10009970m.g
I
0.456
cgd2_2120
Cryptosporidium parvum
cgd2_2120
N
0.456
Chro.20230
Cryptosporidium hominis
Chro.20230
N
0.456
evm.TU.supercontig_11.167
Carica papaya
evm.TU.supercontig_11.167
I
0.455
mgf016363m
Mimulus guttatus
mgf016363m
I
0.455
evm.TU.supercontig_19.183
Carica papaya
evm.TU.supercontig_19.183
I
0.453
SNAPOd2T00000181001
Oikopleura dioica
SNAPOd2T00000181001
N
0.452
estExt_fgenesh1_pm.C_880025
Physcomitrella patens
estExt_fgenesh1_pm.C_880025
I
0.452
Bo7g061420
Brassica oleracea
Bo7g061420
I
0.451
Bra025838
Brassica rapa
Bra025838
I
0.451
Bo5g030580
Brassica oleracea
Bo5g030580
I
0.451
Bo8g070350
Brassica oleracea
Bo8g070350
I
0.451
OESDEN_24828
Oesophagostomum dentatum
OESDEN_24828
N
0.450
Gorai.009G186800
Gossypium raimondii
Gorai.009G186800
I
0.450
PK29786.1
Cannabis sativa
PK29786.1
I
0.450
HMGB1
Vitis vinifera
VIT_08s0007g02200
I
0.449
TCM_021706
Theobroma cacao
TCM_021706
I
0.449
Cla018386
Citrullus lanatus
Cla018386
I
0.449
fgenesh2_kg.6__1935__AT5G23420.1
Arabidopsis lyrata
fgenesh2_kg.6__1935__AT5G23420.1
N
0.449
PGSC0003DMG400008501
Solanum tuberosum
PGSC0003DMG400008501
I
0.449
GSMUA_Achr9G21200_001
Musa acuminata
GSMUA_Achr9G21200_001
I
0.449
GSMUA_Achr2G03630_001
Musa acuminata
GSMUA_Achr2G03630_001
I
0.449
GSMUA_Achr10G07270_001
Musa acuminata
GSMUA_Achr10G07270_001
I
0.449
Eucgr.A00506
Eucalyptus grandis
Eucgr.A00506
I
0.449
BGIBMGA005288
Bombyx mori
BGIBMGA005288
N
0.448
HMEL015307
Heliconius melpomene
HMEL015307
N
0.448
Bostr.18351s0219
Boechera stricta
Bostr.18351s0219
I
0.446
Carubv10014808m.g
Capsella rubella
Carubv10014808m.g
I
0.446
Cagra.1891s0017
Capsella grandiflora
Cagra.1891s0017
I
0.446
TCM_042534
Theobroma cacao
TCM_042534
I
0.446
HMGB4
Arabidopsis lyrata
fgenesh2_kg.3__3350__AT2G17560.1
I
0.446
LPERR08G00140
Leersia perrieri
LPERR08G00140
N
0.446
HMGB4
Arabidopsis thaliana
AT2G17560
I
0.446
GF12460
Drosophila ananassae
FBgn0089497
N
0.445
GJ21774
Drosophila virilis
FBgn0208892
N
0.445
Cagra.6160s0027
Capsella grandiflora
Cagra.6160s0027
I
0.445
GG19998
Drosophila erecta
FBgn0112197
N
0.445
SapurV1A.0016s0600
Salix purpurea
SapurV1A.0016s0600
I
0.445
Bostr.7128s0662
Boechera stricta
Bostr.7128s0662
I
0.445
Carubv10012681m.g
Capsella rubella
Carubv10012681m.g
I
0.445
GD25013
Drosophila simulans
FBgn0196325
N
0.445
GE11532
Drosophila yakuba
FBgn0229332
N
0.445
Ssrp
Drosophila melanogaster
FBgn0010278
N
0.445
HMGB3
Arabidopsis thaliana
AT1G20696
I
0.445
HMGB3
Arabidopsis lyrata
fgenesh2_kg.1__2258__AT1G20696.3
I
0.445
Cucsa.272190
Cucumis sativus
Cucsa.272190
I
0.444
gene20487-v1.0-hybrid
Fragaria vesca
gene20487-v1.0-hybrid
I
0.444
Cla023817
Citrullus lanatus
Cla023817
I
0.444
GH21151
Drosophila grimshawi
FBgn0128613
N
0.444
e_gw1.6.1001.1
Ostreococcus RCC809
e_gw1.6.1001.1
N
0.442
gw1.106.60.1
Physcomitrella patens
gw1.106.60.1
I
0.442
gw1.106.59.1
Physcomitrella patens
gw1.106.59.1
I
0.442
Bra037266
Brassica rapa
Bra037266
I
0.440
Thhalv10022905m.g
Eutrema salsugineum
Thhalv10022905m.g
I
0.440
SapurV1A.2780s0020
Salix purpurea
SapurV1A.2780s0020
I
0.438
Cucsa.067200
Cucumis sativus
Cucsa.067200
I
0.438
SapurV1A.0061s0170
Salix purpurea
SapurV1A.0061s0170
I
0.438
Aquca_004_00335
Aquilegia coerulea
Aquca_004_00335
I
0.437
Aquca_015_00344
Aquilegia coerulea
Aquca_015_00344
I
0.437
YQE_02071
Dendroctonus ponderosae
YQE_02071
N
0.437
Lus10035511.g
Linum usitatissimum
Lus10035511.g
I
0.437
Bo7g014280
Brassica oleracea
Bo7g014280
I
0.436
29669.m000844
Ricinus communis
29669.m000844
I
0.435
OS06G0728000
Oryza sativa
OS06G0728000
I
0.434
OPUNC06G25640
Oryza punctata
OPUNC06G25640
I
0.434
OMERI06G28030
Oryza meridionalis
OMERI06G28030
I
0.434
OLONG_007465
Oryza longistaminata
OLONG_007465
I
0.434
ONIVA06G31070
Oryza nivara
ONIVA06G31070
I
0.434
OBART06G28090
Oryza barthii
OBART06G28090
I
0.434
ORGLA06G0238300
Oryza glaberrima
ORGLA06G0238300
I
0.434
OGLUM06G29480
Oryza glumaepatula
OGLUM06G29480
I
0.434
ORUFI06G30030
Oryza rufipogon
ORUFI06G30030
I
0.434
Pavir.Db00040
Panicum virgatum
Pavir.Db00040
I
0.434
LPERR06G23570
Leersia perrieri
LPERR06G23570
I
0.434
Si007288m.g
Setaria italica
Si007288m.g
I
0.434
Pavir.J04920
Panicum virgatum
Pavir.J04920
I
0.434
mgf009330m
Mimulus guttatus
mgf009330m
I
0.434
Pm018913
Prunus mume
Pm018913
I
0.433
MDP0000362980
Malus domestica
MDP0000362980
I
0.433
PRUPE_ppa012424mg
Prunus persica
PRUPE_ppa012424mg
I
0.433
MDP0000757111
Malus domestica
MDP0000757111
I
0.433
MTR_5g024180
Medicago truncatula
MTR_5g024180
I
0.432
CpipJ_CPIJ002953
Culex pipiens
CpipJ_CPIJ002953
N
0.431
CpipJ_CPIJ020011
Culex pipiens
CpipJ_CPIJ020011
I
0.431
CPIJ002953
Culex quinquefasciatus
CPIJ002953
N
0.431
LCUP005047
Lucilia cuprina
LCUP005047
N
0.431
CPIJ020011
Culex quinquefasciatus
CPIJ020011
I
0.431
BRADI3G12920
Brachypodium distachyon
BRADI3G12920
I
0.430
KGM_13851
Danaus plexippus
KGM_13851
N
0.430
Ca_10725
Cicer arietinum
Ca_10725
I
0.429
L798_13679
Zootermopsis nevadensis
L798_13679
N
0.429
MDP0000607529
Malus domestica
MDP0000607529
I
0.428
GRMZM5G834758
Zea mays
GRMZM5G834758
I
0.428
BRADI1G29730
Brachypodium distachyon
BRADI1G29730
I
0.428
F775_27510
Aegilops tauschii
F775_27510
I
0.428
OB06G35870
Oryza brachyantha
OB06G35870
I
0.428
Sb10g030910
Sorghum bicolor
Sb10g030910
I
0.428
MLOC_57633
Hordeum vulgare
MLOC_57633
I
0.428
ENSMMUP00000037751
Macaca fascicularis
ENSMMUP00000037751
N
0.428
MLOC_78556
Hordeum vulgare
MLOC_78556
I
0.428
TRIUR3_13577
Triticum urartu
TRIUR3_13577
I
0.428
Aquca_035_00040
Aquilegia coerulea
Aquca_035_00040
I
0.427
fgenesh1_pg.scaffold_277000017
Physcomitrella patens
fgenesh1_pg.scaffold_277000017
I
0.427
cassava18626.valid.m1
Manihot esculenta
cassava18626.valid.m1
I
0.426
cassava35948.valid.m1
Manihot esculenta
cassava35948.valid.m1
I
0.426
cassava18624.valid.m1
Manihot esculenta
cassava18624.valid.m1
I
0.426
30170.m014386
Ricinus communis
30170.m014386
I
0.426
Cflo_11824--XP_001120264.1_APIME
Camponotus floridanus
Cflo_11824--XP_001120264.1_APIME
N
0.426
Hsal_00538--XP_001120264.1_APIME
Harpegnathos saltator
Hsal_00538--XP_001120264.1_APIME
N
0.426
cassava18625.valid.m1
Manihot esculenta
cassava18625.valid.m1
I
0.426
VIT_18s0122g01190
Vitis vinifera
VIT_18s0122g01190
I
0.426
GB54571
Apis mellifera
GB54571
N
0.426
SELMODRAFT_18312
Selaginella moellendorffii
SELMODRAFT_18312
I
0.425
SELMODRAFT_18313
Selaginella moellendorffii
SELMODRAFT_18313
I
0.425
PGSC0003DMG400018685
Solanum tuberosum
PGSC0003DMG400018685
I
0.424
SapurV1A.0085s0030
Salix purpurea
SapurV1A.0085s0030
I
0.422
TC012866
Tribolium castaneum
TC012866
N
0.422
Traes_7BL_871FCAF2F
Triticum aestivum
Traes_7BL_871FCAF2F
I
0.420
Traes_7AL_959534EDB
Triticum aestivum
Traes_7AL_959534EDB
I
0.420
GRMZM2G162284
Zea mays
GRMZM2G162284
I
0.420
Traes_7DL_824BFE90C
Triticum aestivum
Traes_7DL_824BFE90C
I
0.420
TRIUR3_35367
Triticum urartu
TRIUR3_35367
I
0.420
GI18750
Drosophila mojavensis
FBgn0141489
N
0.418
PRUPE_ppa011596mg
Prunus persica
PRUPE_ppa011596mg
I
0.418
Bo7g117500
Brassica oleracea
Bo7g117500
I
0.418
Bra011624
Brassica rapa
Bra011624
I
0.418
PRUPE_ppa012972mg
Prunus persica
PRUPE_ppa012972mg
I
0.418
Pm026798
Prunus mume
Pm026798
I
0.418
POPTR_0005s10440
Populus trichocarpa
POPTR_0005s10440
I
0.418
MLOC_77667
Hordeum vulgare
MLOC_77667
I
0.418
Bra017723
Brassica rapa
Bra017723
I
0.418
Bo1g006360
Brassica oleracea
Bo1g006360
I
0.418
HCOI01913300
Haemonchus contortus
HCOI01913300
I
0.417
HCOI01912600
Haemonchus contortus
HCOI01912600
I
0.417
Ca_04825
Cicer arietinum
Ca_04825
I
0.416
Eucgr.F03571
Eucalyptus grandis
Eucgr.F03571
I
0.416
SapurV1A.0266s0310
Salix purpurea
SapurV1A.0266s0310
I
0.416
orange1.1g031906m.g
Citrus sinensis
orange1.1g031906m.g
I
0.416
Ciclev10002782m.g
Citrus clementina
Ciclev10002782m.g
I
0.416
POPTR_0002s01000
Populus trichocarpa
POPTR_0002s01000
I
0.416
XM_002306945.1
Populus trichocarpa
POPTR_0005s27390
I
0.416
GSMUA_Achr4G25860_001
Musa acuminata
GSMUA_Achr4G25860_001
I
0.416
Gorai.005G114500
Gossypium raimondii
Gorai.005G114500
I
0.416
Gorai.002G115100
Gossypium raimondii
Gorai.002G115100
I
0.416
TCM_034406
Theobroma cacao
TCM_034406
I
0.416
mgf014518m
Mimulus guttatus
mgf014518m
I
0.415