PGSC0003DMG400025304 (Solanum tuberosum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PGSC0003DMG400025304 T331855_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.505 0.623
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400065103 Sox 111 180
PGSC0003DMT400065104 Sox 111 179

Links

Other Sox family TFs
Other Solanum tuberosum TFs

246 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.689
Pm006054 Prunus mume Pm006054 I 0.610
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.610
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.593
MDP0000205665 Malus domestica MDP0000205665 I 0.591
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.588
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.588
30131.m007272 Ricinus communis 30131.m007272 I 0.574
Cla009222 Citrullus lanatus Cla009222 I 0.566
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.566
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.562
Bra026498 Brassica rapa Bra026498 I 0.560
Bo9g014140 Brassica oleracea Bo9g014140 I 0.560
TCM_007659 Theobroma cacao TCM_007659 I 0.559
Bo2g160920 Brassica oleracea Bo2g160920 I 0.556
Bra029371 Brassica rapa Bra029371 I 0.556
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.555
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.550
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.550
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.550
Si014434m.g Setaria italica Si014434m.g N 0.546
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.545
OBART08G00070 Oryza barthii OBART08G00070 I 0.545
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.545
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.545
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.545
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.545
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.545
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.545
OS08G0101100 Oryza sativa OS08G0101100 I 0.545
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.544
mgf009124m Mimulus guttatus mgf009124m N 0.541
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.537
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.535
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.533
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.532
OB08G10120 Oryza brachyantha OB08G10120 N 0.527
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.519
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.519
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.513
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.511
PK03866.1 Cannabis sativa PK03866.1 I 0.509
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.509
HMG-1 Pisum sativum Q41026_PEA D 0.505
Ca_05351 Cicer arietinum Ca_05351 I 0.499
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.498
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.496
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.489
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.488
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.488
HMGB2 Arabidopsis thaliana AT1G20693 I 0.488
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.488
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.488
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.484
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.484
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.484
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.483
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.483
PK11149.1 Cannabis sativa PK11149.1 I 0.483
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.481
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.478
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.477
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.476
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.476
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.473
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.472
MDOA007633 Musca domestica MDOA007633 N 0.472
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.472
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.472
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.472
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.472
Bo7g101270 Brassica oleracea Bo7g101270 I 0.471
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.471
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.471
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.471
HMGB1 Arabidopsis thaliana AT3G51880 I 0.471
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.469
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.469
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.467
Pm002934 Prunus mume Pm002934 I 0.466
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.466
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.465
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.465
Bo8g081200 Brassica oleracea Bo8g081200 I 0.465
Ca_19340 Cicer arietinum Ca_19340 I 0.465
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.465
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.463
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.463
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.462
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.462
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.461
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.459
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.459
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.459
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.458
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.458
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.458
HMGB7 Arabidopsis thaliana AT5G23420 N 0.458
Bra002073 Brassica rapa Bra002073 I 0.457
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.456
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.456
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.456
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.455
mgf016363m Mimulus guttatus mgf016363m I 0.455
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.453
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.452
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.452
Bo7g061420 Brassica oleracea Bo7g061420 I 0.451
Bra025838 Brassica rapa Bra025838 I 0.451
Bo5g030580 Brassica oleracea Bo5g030580 I 0.451
Bo8g070350 Brassica oleracea Bo8g070350 I 0.451
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.450
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.450
PK29786.1 Cannabis sativa PK29786.1 I 0.450
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.449
TCM_021706 Theobroma cacao TCM_021706 I 0.449
Cla018386 Citrullus lanatus Cla018386 I 0.449
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.449
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.449
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.449
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.449
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.449
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.449
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.448
HMEL015307 Heliconius melpomene HMEL015307 N 0.448
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.446
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.446
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.446
TCM_042534 Theobroma cacao TCM_042534 I 0.446
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.446
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.446
HMGB4 Arabidopsis thaliana AT2G17560 I 0.446
GF12460 Drosophila ananassae FBgn0089497 N 0.445
GJ21774 Drosophila virilis FBgn0208892 N 0.445
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.445
GG19998 Drosophila erecta FBgn0112197 N 0.445
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.445
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.445
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.445
GD25013 Drosophila simulans FBgn0196325 N 0.445
GE11532 Drosophila yakuba FBgn0229332 N 0.445
Ssrp Drosophila melanogaster FBgn0010278 N 0.445
HMGB3 Arabidopsis thaliana AT1G20696 I 0.445
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.445
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.444
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.444
Cla023817 Citrullus lanatus Cla023817 I 0.444
GH21151 Drosophila grimshawi FBgn0128613 N 0.444
e_gw1.6.1001.1 Ostreococcus RCC809 e_gw1.6.1001.1 N 0.442
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.442
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.442
Bra037266 Brassica rapa Bra037266 I 0.440
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.440
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.438
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.438
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.438
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.437
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.437
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.437
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.437
Bo7g014280 Brassica oleracea Bo7g014280 I 0.436
29669.m000844 Ricinus communis 29669.m000844 I 0.435
OS06G0728000 Oryza sativa OS06G0728000 I 0.434
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.434
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.434
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.434
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.434
OBART06G28090 Oryza barthii OBART06G28090 I 0.434
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.434
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.434
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.434
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.434
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.434
Si007288m.g Setaria italica Si007288m.g I 0.434
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.434
mgf009330m Mimulus guttatus mgf009330m I 0.434
Pm018913 Prunus mume Pm018913 I 0.433
MDP0000362980 Malus domestica MDP0000362980 I 0.433
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.433
MDP0000757111 Malus domestica MDP0000757111 I 0.433
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.432
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.431
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.431
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.431
LCUP005047 Lucilia cuprina LCUP005047 N 0.431
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.431
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.430
KGM_13851 Danaus plexippus KGM_13851 N 0.430
Ca_10725 Cicer arietinum Ca_10725 I 0.429
L798_13679 Zootermopsis nevadensis L798_13679 N 0.429
MDP0000607529 Malus domestica MDP0000607529 I 0.428
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.428
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.428
F775_27510 Aegilops tauschii F775_27510 I 0.428
OB06G35870 Oryza brachyantha OB06G35870 I 0.428
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.428
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.428
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.428
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.428
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.428
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.427
fgenesh1_pg.scaffold_277000017 Physcomitrella patens fgenesh1_pg.scaffold_277000017 I 0.427
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.426
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.426
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.426
30170.m014386 Ricinus communis 30170.m014386 I 0.426
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.426
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.426
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.426
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.426
GB54571 Apis mellifera GB54571 N 0.426
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.425
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.425
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.424
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.422
TC012866 Tribolium castaneum TC012866 N 0.422
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.420
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.420
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.420
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.420
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.420
GI18750 Drosophila mojavensis FBgn0141489 N 0.418
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.418
Bo7g117500 Brassica oleracea Bo7g117500 I 0.418
Bra011624 Brassica rapa Bra011624 I 0.418
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.418
Pm026798 Prunus mume Pm026798 I 0.418
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.418
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.418
Bra017723 Brassica rapa Bra017723 I 0.418
Bo1g006360 Brassica oleracea Bo1g006360 I 0.418
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.417
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.417
Ca_04825 Cicer arietinum Ca_04825 I 0.416
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.416
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.416
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.416
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.416
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.416
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.416
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.416
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.416
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.416
TCM_034406 Theobroma cacao TCM_034406 I 0.416
mgf014518m Mimulus guttatus mgf014518m I 0.415