PGSC0003DMG400026151 (Solanum tuberosum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PGSC0003DMG400026151 T331857_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400067249 Sox 161 202
PGSC0003DMT400067250 Sox 161 202

Links

Other Sox family TFs
Other Solanum tuberosum TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30116.m000393 Ricinus communis 30116.m000393 N 0.672
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.651
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.646
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.646
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.646
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.638
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.629
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.623
Cla002005 Citrullus lanatus Cla002005 N 0.623
Si017699m.g Setaria italica Si017699m.g N 0.621
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.621
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.621
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.621
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.621
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.621
OBART02G34050 Oryza barthii OBART02G34050 N 0.621
OB07G29110 Oryza brachyantha OB07G29110 N 0.621
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.621
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.621
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.621
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.621
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.621
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.621
OS02G0770600 Oryza sativa OS02G0770600 N 0.621
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.616
PK16821.1 Cannabis sativa PK16821.1 N 0.616
OB02G40920 Oryza brachyantha OB02G40920 N 0.615
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.609
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.609
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.605
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.599
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.599
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.584
F775_20121 Aegilops tauschii F775_20121 N 0.583
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.583
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.583
mgf000387m Mimulus guttatus mgf000387m N 0.583
mgf013454m Mimulus guttatus mgf013454m N 0.583
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.583
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.581
TCM_006422 Theobroma cacao TCM_006422 N 0.581
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.580
MDP0000597087 Malus domestica MDP0000597087 N 0.572
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.571
PK04394.1 Cannabis sativa PK04394.1 N 0.563
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.557
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.556
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.521
MDP0000634922 Malus domestica MDP0000634922 N 0.503
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.501
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.490
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.448