CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400026151
(
Solanum tuberosum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
PGSC0003DMG400026151
T331857_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400067249
Sox
161
202
CSFVGTYKKLRKHVRREHPSARPLEVDPSLAEKWKKLEHERE
PGSC0003DMT400067250
Sox
161
202
CSFVGTYKKLRKHVRREHPSARPLEVDPSLAEKWKKLEHERE
Links
Other
Sox
family TFs
Other
Solanum tuberosum
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30116.m000393
Ricinus communis
30116.m000393
N
0.672
POPTR_0003s01620
Populus trichocarpa
POPTR_0003s01620
N
0.651
orange1.1g017878m.g
Citrus sinensis
orange1.1g017878m.g
N
0.646
SapurV1A.0647s0030
Salix purpurea
SapurV1A.0647s0030
N
0.646
Ciclev10001601m.g
Citrus clementina
Ciclev10001601m.g
N
0.646
VIT_18s0001g03950
Vitis vinifera
VIT_18s0001g03950
N
0.638
PRUPE_ppa007591mg
Prunus persica
PRUPE_ppa007591mg
N
0.629
Cucsa.239250
Cucumis sativus
Cucsa.239250
N
0.623
Cla002005
Citrullus lanatus
Cla002005
N
0.623
Si017699m.g
Setaria italica
Si017699m.g
N
0.621
BGIOSGA009119
Oryza indica
BGIOSGA009119
N
0.621
Pavir.Aa00349
Panicum virgatum
Pavir.Aa00349
N
0.621
Pavir.J01310
Panicum virgatum
Pavir.J01310
N
0.621
OMERI02G32400
Oryza meridionalis
OMERI02G32400
I
0.621
ONIVA02G36110
Oryza nivara
ONIVA02G36110
I
0.621
OBART02G34050
Oryza barthii
OBART02G34050
N
0.621
OB07G29110
Oryza brachyantha
OB07G29110
N
0.621
ORUFI02G35580
Oryza rufipogon
ORUFI02G35580
I
0.621
LPERR02G27910
Leersia perrieri
LPERR02G27910
N
0.621
OPUNC02G31450
Oryza punctata
OPUNC02G31450
N
0.621
OLONG_015646
Oryza longistaminata
OLONG_015646
N
0.621
OGLUM02G35200
Oryza glumaepatula
OGLUM02G35200
I
0.621
ORGLA02G0294700
Oryza glaberrima
ORGLA02G0294700
N
0.621
OS02G0770600
Oryza sativa
OS02G0770600
N
0.621
PGSC0003DMG400023744
Solanum tuberosum
PGSC0003DMG400023744
N
0.616
PK16821.1
Cannabis sativa
PK16821.1
N
0.616
OB02G40920
Oryza brachyantha
OB02G40920
N
0.615
orange1.1g020440m.g
Citrus sinensis
orange1.1g020440m.g
N
0.609
Ciclev10001827m.g
Citrus clementina
Ciclev10001827m.g
N
0.609
Aquca_014_00165
Aquilegia coerulea
Aquca_014_00165
N
0.605
SapurV1A.0869s0080
Salix purpurea
SapurV1A.0869s0080
N
0.599
POPTR_0001s21610
Populus trichocarpa
POPTR_0001s21610
N
0.599
GSMUA_Achr2G01240_001
Musa acuminata
GSMUA_Achr2G01240_001
N
0.584
F775_20121
Aegilops tauschii
F775_20121
N
0.583
Traes_6DL_647FC758E1
Triticum aestivum
Traes_6DL_647FC758E1
N
0.583
TRIUR3_20834
Triticum urartu
TRIUR3_20834
N
0.583
mgf000387m
Mimulus guttatus
mgf000387m
N
0.583
mgf013454m
Mimulus guttatus
mgf013454m
N
0.583
MLOC_54605
Hordeum vulgare
MLOC_54605
N
0.583
cassava19406.valid.m1
Manihot esculenta
cassava19406.valid.m1
N
0.581
TCM_006422
Theobroma cacao
TCM_006422
N
0.581
BRADI3G57700
Brachypodium distachyon
BRADI3G57700
N
0.580
MDP0000597087
Malus domestica
MDP0000597087
N
0.572
gene11787-v1.0-hybrid
Fragaria vesca
gene11787-v1.0-hybrid
N
0.571
PK04394.1
Cannabis sativa
PK04394.1
N
0.563
evm.TU.supercontig_49.134
Carica papaya
evm.TU.supercontig_49.134
N
0.557
VIT_12s0034g00960
Vitis vinifera
VIT_12s0034g00960
N
0.556
Gorai.005G260200
Gossypium raimondii
Gorai.005G260200
N
0.521
MDP0000634922
Malus domestica
MDP0000634922
N
0.503
evm.TU.supercontig_49.133
Carica papaya
evm.TU.supercontig_49.133
N
0.501
GSMUA_Achr8G18160_001
Musa acuminata
GSMUA_Achr8G18160_001
N
0.490
Thhalv10028879m.g
Eutrema salsugineum
Thhalv10028879m.g
N
0.448