Phatr3_J11888 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J11888 T331904_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02819
M02490_2.00 		Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN		 PBM
Weirauch et al.(2014)
pTH9672 		0.447 0.362
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J11888.p1 Sox 92 161

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCAFG00000016282 Canis familiaris ENSCAFG00000016282 I 0.454
CTHT_0053790 Chaetomium thermophilum CTHT_0053790 I 0.453
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.447
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.447
NCU02819 Neurospora crassa NCU02819 D 0.447
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.447
V499_08602 Pseudogymnoascus pannorum V499_08602 I 0.446
GMDG_05273 Pseudogymnoascus destructans GMDG_05273 I 0.440
Phatr3_J34626 Phaeodactylum tricornutum Phatr3_J34626 N 0.439
Phatr3_J45662 Phaeodactylum tricornutum Phatr3_J45662 I 0.439
Phatr3_J39880 Phaeodactylum tricornutum Phatr3_J39880 N 0.439
VDAG_04140 Verticillium dahliae VDAG_04140 I 0.434
THITE_2121767 Thielavia terrestris THITE_2121767 I 0.434
CH063_04081 Colletotrichum higginsianum CH063_04081 I 0.434
VDAG_09161 Verticillium dahliae VDAG_09161 I 0.434
VDBG_04589 Verticillium alfalfae VDBG_04589 I 0.434
CFIO01_13531 Colletotrichum fioriniae CFIO01_13531 I 0.434
CGGC5_9539 Colletotrichum gloeosporioides CGGC5_9539 I 0.434
PODANS_1_7390 Podospora anserina PODANS_1_7390 I 0.434
GGTG_01518 Gaeumannomyces graminis GGTG_01518 I 0.434
VDBG_04589 Verticillium albo atrum VDBG_04589 I 0.434
MYCTH_2294934 Myceliophthora thermophila MYCTH_2294934 I 0.434
MGG_01641 Magnaporthe oryzae MGG_01641 I 0.434
MAPG_06737 Magnaporthe poae MAPG_06737 I 0.434
GLRG_01394 Colletotrichum graminicola GLRG_01394 I 0.434
CSUB01_00364 Colletotrichum sublineola CSUB01_00364 I 0.434
CPUR_04901 Claviceps purpurea CPUR_04901 I 0.428
OCS_01486 Ophiocordyceps sinensis OCS_01486 I 0.428
Phatr3_J43419 Phaeodactylum tricornutum Phatr3_J43419 N 0.415