CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Phatr3_J11888
(
Phaeodactylum tricornutum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Phatr3_J11888
T331904_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU02819
M02490_2.00
Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN
PBM
Weirauch et al.(2014)
pTH9672
0.447
0.362
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Phatr3_J11888.p1
Sox
92
161
PKRPLSAYNLFFQEERNRLINSDKAGVGFENMAKTIAAKWRSLDVDAKAPYEEKATVNKQQYHVAVAQWR
Links
Other
Sox
family TFs
Other
Phaeodactylum tricornutum
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy