Phatr3_J42576 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J42576 T331916_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J42576.p1 Sox 72 101
Phatr3_J42576.p1 Sox 112 171

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.501
Thaps4075 Thalassiosira pseudonana Thaps4075 N 0.496
Thaps4076 Thalassiosira pseudonana Thaps4076 N 0.496
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.496
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.490
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.480
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.467
Thaps24954 Thalassiosira pseudonana Thaps24954 N 0.464
Thaps10099 Thalassiosira pseudonana Thaps10099 N 0.464
Thaps22372 Thalassiosira pseudonana Thaps22372 N 0.464
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.455
Phatr3_J39045 Phaeodactylum tricornutum Phatr3_J39045 N 0.453
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.448
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.440
Phatr3_J49937 Phaeodactylum tricornutum Phatr3_J49937 N 0.440
fgenesh2_pg.7_#_214 Fragilariopsis cylindrus fgenesh2_pg.7_#_214 N 0.438
MAM_05902 Metarhizium album MAM_05902 N 0.432
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.431
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.431
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.428
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.423
TGME49_081900 Toxoplasma gondii TGME49_081900 N 0.418
Phatr3_J48554 Phaeodactylum tricornutum Phatr3_J48554 N 0.415