Phatr3_J45662 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J45662 T331919_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NCU02819
M02490_2.00
Neurospora crassa
NNHNNNNNRN

NYNNNNNDNN
PBM
Weirauch et al.(2014)
pTH9672
0.425 0.290
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J45662.p1 Sox 67 147

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30178.m000863 Ricinus communis 30178.m000863 N 0.000
AT4G12850 Arabidopsis thaliana AT4G12850 N 0.000
Bostr.2021s0020 Boechera stricta Bostr.2021s0020 N 0.000
Ca_17053 Cicer arietinum Ca_17053 N 0.000
Ciclev10016721m.g Citrus clementina Ciclev10016721m.g N 0.000
Cucsa.388460 Cucumis sativus Cucsa.388460 N 0.000
Eucgr.H00706 Eucalyptus grandis Eucgr.H00706 N 0.000
evm.TU.supercontig_8.54 Carica papaya evm.TU.supercontig_8.54 N 0.000
GLYMA08G45680 Glycine max GLYMA08G45680 N 0.000
GLYMA18G24443 Glycine max GLYMA18G24443 N 0.000
Gorai.001G227800 Gossypium raimondii Gorai.001G227800 N 0.000
mgf019147m Mimulus guttatus mgf019147m N 0.000
orange1.1g030575m.g Citrus sinensis orange1.1g030575m.g N 0.000
PK01836.1 Cannabis sativa PK01836.1 N 0.000
POPTR_0002s24040 Populus trichocarpa POPTR_0002s24040 N 0.000
POPTR_0014s17510 Populus trichocarpa POPTR_0014s17510 N 0.000
PRUPE_ppa019053mg Prunus persica PRUPE_ppa019053mg N 0.000
SapurV1A.0071s0660 Salix purpurea SapurV1A.0071s0660 N 0.000
TCM_002653 Theobroma cacao TCM_002653 N 0.000