Phatr3_J45662 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J45662 T331919_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NCU02819
M02490_2.00
Neurospora crassa
NNHNNNNNRN

NYNNNNNDNN
PBM
Weirauch et al.(2014)
pTH9672
0.425 0.290
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J45662.p1 Sox 67 147

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00133p00071910 Amborella trichopoda AMTR_s00133p00071910 I 0.000
Aquca_025_00152 Aquilegia coerulea Aquca_025_00152 N 0.000
ATMYB35 Populus trichocarpa POPTR_0017s11140 N 0.000
ATMYB35 Vitis vinifera VIT_14s0066g02180 N 0.000
ATMYB35 Arabidopsis lyrata fgenesh2_kg.5__614__AT3G28470.1 N 0.000
BGIOSGA010923 Oryza indica BGIOSGA010923 I 0.000
Bo7g091360 Brassica oleracea Bo7g091360 N 0.000
Bostr.0556s0504 Boechera stricta Bostr.0556s0504 N 0.000
Bra025337 Brassica rapa Bra025337 N 0.000
Cagra.2310s0015 Capsella grandiflora Cagra.2310s0015 N 0.000
Carubv10017650m.g Capsella rubella Carubv10017650m.g N 0.000
cassava26191.m1 Manihot esculenta cassava26191.m1 N 0.000
cassava27944.m1 Manihot esculenta cassava27944.m1 N 0.000
cassava41279.m1 Manihot esculenta cassava41279.m1 N 0.000
Ca_10555 Cicer arietinum Ca_10555 N 0.000
Ciclev10013340m.g Citrus clementina Ciclev10013340m.g I 0.000
Ciclev10023930m.g Citrus clementina Ciclev10023930m.g N 0.000
Cla019436 Citrullus lanatus Cla019436 N 0.000
Cucsa.197410 Cucumis sativus Cucsa.197410 N 0.000
Eucgr.C02280 Eucalyptus grandis Eucgr.C02280 I 0.000
Eucgr.C02391 Eucalyptus grandis Eucgr.C02391 I 0.000
Eucgr.I02017 Eucalyptus grandis Eucgr.I02017 I 0.000
evm.TU.contig_28309.2 Carica papaya evm.TU.contig_28309.2 I 0.000
e_gw1.204.95.1 Physcomitrella patens e_gw1.204.95.1 N 0.000
e_gw1.284.46.1 Physcomitrella patens e_gw1.284.46.1 N 0.000
e_gw1.46.242.1 Physcomitrella patens e_gw1.46.242.1 N 0.000
F775_14388 Aegilops tauschii F775_14388 I 0.000
gene01311-v1.0-hybrid Fragaria vesca gene01311-v1.0-hybrid N 0.000
GLYMA13G04920 Glycine max GLYMA13G04920 I 0.000
GLYMA19G02090 Glycine max GLYMA19G02090 I 0.000
Gorai.010G139300 Gossypium raimondii Gorai.010G139300 N 0.000
GRMZM2G308034 Zea mays GRMZM2G308034 I 0.000
GSMUA_Achr3G10060_001 Musa acuminata GSMUA_Achr3G10060_001 I 0.000
LPERR03G12200 Leersia perrieri LPERR03G12200 I 0.000
LPERR12G16630 Leersia perrieri LPERR12G16630 N 0.000
Lus10005834.g Linum usitatissimum Lus10005834.g N 0.000
Lus10033119.g Linum usitatissimum Lus10033119.g N 0.000
Lus10036660.g Linum usitatissimum Lus10036660.g N 0.000
Lus10039462.g Linum usitatissimum Lus10039462.g N 0.000
MDP0000258046 Malus domestica MDP0000258046 N 0.000
mgf012871m Mimulus guttatus mgf012871m I 0.000
mgf021409m Mimulus guttatus mgf021409m I 0.000
MTR_3g045430 Medicago truncatula MTR_3g045430 N 0.000
MTR_6g009430 Medicago truncatula MTR_6g009430 N 0.000
MYB35 Arabidopsis thaliana AT3G28470 N 0.000
OB03G23760 Oryza brachyantha OB03G23760 I 0.000
OBART03G13840 Oryza barthii OBART03G13840 I 0.000
OGLUM03G13980 Oryza glumaepatula OGLUM03G13980 I 0.000
OMERI03G12640 Oryza meridionalis OMERI03G12640 I 0.000
ONIVA03G15100 Oryza nivara ONIVA03G15100 I 0.000
OPUNC03G13320 Oryza punctata OPUNC03G13320 I 0.000
OPUNC12G18070 Oryza punctata OPUNC12G18070 I 0.000
orange1.1g043557m.g Citrus sinensis orange1.1g043557m.g I 0.000
ORGLA03G0133600 Oryza glaberrima ORGLA03G0133600 I 0.000
ORUFI03G14500 Oryza rufipogon ORUFI03G14500 I 0.000
Pavir.Db01456 Panicum virgatum Pavir.Db01456 I 0.000
PDK_20s1379331g001 Phoenix dactylifera PDK_20s1379331g001 I 0.000
PDK_20s1406481g002 Phoenix dactylifera PDK_20s1406481g002 N 0.000
PGSC0003DMG400008532 Solanum tuberosum PGSC0003DMG400008532 I 0.000
Pm015813 Prunus mume Pm015813 N 0.000
Pm024633 Prunus mume Pm024633 N 0.000
POPTR_0012s07450 Populus trichocarpa POPTR_0012s07450 N 0.000
POPTR_0015s07900 Populus trichocarpa POPTR_0015s07900 N 0.000
PRUPE_ppa015976mg Prunus persica PRUPE_ppa015976mg N 0.000
PRUPE_ppa017571mg Prunus persica PRUPE_ppa017571mg N 0.000
SapurV1A.0138s0120 Salix purpurea SapurV1A.0138s0120 N 0.000
SapurV1A.0161s0110 Salix purpurea SapurV1A.0161s0110 N 0.000
SapurV1A.1048s0030 Salix purpurea SapurV1A.1048s0030 I 0.000
Sb01g038250 Sorghum bicolor Sb01g038250 I 0.000
Solyc03g059200.1 Solanum lycopersicum Solyc03g059200.1 I 0.000
TCM_018082 Theobroma cacao TCM_018082 N 0.000
TCM_045715 Theobroma cacao TCM_045715 N 0.000
Thhalv10005502m.g Eutrema salsugineum Thhalv10005502m.g N 0.000
Traes_1AL_F0688BFDE Triticum aestivum Traes_1AL_F0688BFDE I 0.000
Traes_4AS_4EFBA88E4 Triticum aestivum Traes_4AS_4EFBA88E4 I 0.000
Traes_4BL_532725AD5 Triticum aestivum Traes_4BL_532725AD5 I 0.000
Traes_4DL_DFCF4A15A Triticum aestivum Traes_4DL_DFCF4A15A I 0.000
VIT_17s0000g05400 Vitis vinifera VIT_17s0000g05400 I 0.000