CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Phatr3_J8737
(
Phaeodactylum tricornutum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Phatr3_J8737
T331936_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Phatr3_J8737.p1
Sox
548
616
PKRPVSAYLIFANQQRVVWKDKLEGLSVAESSKLLADRWKAVPDRLKERYEKVAEQARIKYRLDKEQYD
Links
Other
Sox
family TFs
Other
Phaeodactylum tricornutum
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgeneshHS_pg.scaffold_31000097
Naegleria gruberi
fgeneshHS_pg.scaffold_31000097
N
0.463
KUCA_T00005075001
Kuraishia capsulata
KUCA_T00005075001
N
0.438
NEMVEDRAFT_v1g59568
Nematostella vectensis
NEMVEDRAFT_v1g59568
N
0.433
Sakowv30021656m.g
Saccoglossus kowalevskii
Sakowv30021656m.g
N
0.430
orange1.1g044275m.g
Citrus sinensis
orange1.1g044275m.g
I
0.419
ACEP19638
Atta cephalotes
ACEP19638
I
0.418