PISMIDRAFT_36586 (Pisolithus microcarpus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PISMIDRAFT_36586 T332035_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN

NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.440 0.377
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS

SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.440 0.377
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN

NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.440 0.377
ROX1
M11346_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.440 0.377
ROX1
M11347_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.440 0.377
Sox7
M00209_2.00
Mus musculus
NNNWBAAT

ATTVWNNN
PBM
Badis et al.(2009)
Sox7_3460
0.416 0.319
SOX7
M03516_2.00
Homo sapiens
AACAATRDNHAKTGTT

AACAMTDNHYATTGTT
SELEX
Jolma et al.(2013)
SOX7_1
0.416 0.319
SOX7
M03517_2.00
Homo sapiens
DAACAATKDYAKTGTTN

NAACAMTRHMATTGTTH
SELEX
Jolma et al.(2013)
SOX7_2
0.416 0.319
SOX7
M03518_2.00
Homo sapiens
NATGAATKDCAKTCATN

NATGAMTGHMATTCATN
SELEX
Jolma et al.(2013)
SOX7_3
0.416 0.319
SOX7
M05787_2.00
Homo sapiens
ACAATDNHATTGT

ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_HT-SELEX
0.416 0.319
SOX7
M11325_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX7_Q2
0.416 0.319
SOX7
M05788_2.00
Homo sapiens
ACAATDNHATTGT

ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_Methyl-HT-SELEX
0.416 0.319
Sox18
M00204_2.00
Mus musculus
NNNWBAAT

ATTVWNNN
PBM
Badis et al.(2009)
Sox18_3506
0.415 0.362
SOX18
M03529_2.00
Homo sapiens
AACAATDNCATTGTT

AACAATGNHATTGTT
SELEX
Jolma et al.(2013)
SOX18_1
0.415 0.348
SOX18
M03530_2.00
Homo sapiens
ATCAATWDCATTGAT

ATCAATGHWATTGAT
SELEX
Jolma et al.(2013)
SOX18_2
0.415 0.348
SOX18
M03531_2.00
Homo sapiens
ATGAATWYCATTCAT

ATGAATGRWATTCAT
SELEX
Jolma et al.(2013)
SOX18_3
0.415 0.348
SOX18
M05791_2.00
Homo sapiens
VACRAYGV

BCRTYGTB
SELEX
Yin et al.(2017)
SOX18_eDBD_HT-SELEX
0.415 0.348
SOX18
M11334_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5_01
0.415 0.348
SOX18
M11335_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5
0.415 0.348
SOX18
M05792_2.00
Homo sapiens
BYATTGTN

NACAATRV
SELEX
Yin et al.(2017)
SOX18_eDBD_Methyl-HT-SELEX
0.415 0.348
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KIK19531 Sox 8 81

Links

Other Sox family TFs
Other Pisolithus microcarpus TFs

409 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL018031 Aedes aegypti AAEL018031 I 0.000
Alligator_sinensis_CCG014455.1 Alligator sinensis Alligator_sinensis_CCG014455.1 I 0.000
A_02037 Schistosoma haematobium A_02037 I 0.000
CLEC009335 Cimex lectularius CLEC009335 I 0.000
Cmyd_10015831 Chelonia mydas Cmyd_10015831 I 0.000
ECANG7_05597 Echinococcus canadensis ECANG7_05597 I 0.000
EmuJ_000748800 Echinococcus multilocularis EmuJ_000748800 I 0.000
ENSAMEG00000019912 Ailuropoda melanoleuca ENSAMEG00000019912 I 0.000
ENSAMXG00000025599 Astyanax mexicanus ENSAMXG00000025599 I 0.000
ENSBTAP00000002386-D1 Bos grunniens ENSBTAP00000002386-D1 I 0.000
ENSCSAG00000019041 Chlorocebus sabaeus ENSCSAG00000019041 I 0.000
ENSGMOG00000020473 Gadus morhua ENSGMOG00000020473 N 0.000
ENSLACG00000005288 Latimeria chalumnae ENSLACG00000005288 I 0.000
ENSMEUG00000007329 Macropus eugenii ENSMEUG00000007329 I 0.000
ENSMICG00000004826 Microcebus murinus ENSMICG00000004826 I 0.000
ENSMPUG00000020086 Mustela putorius furo ENSMPUG00000020086 I 0.000
ENSNLEG00000002050 Nomascus leucogenys ENSNLEG00000002050 I 0.000
ENSONIG00000003253 Oreochromis niloticus ENSONIG00000003253 N 0.000
ENSORLG00000018574 Oryzias latipes ENSORLG00000018574 N 0.000
ENSP00000340799 Macaca fascicularis ENSP00000340799 I 0.000
ENSPANG00000017158 Papio anubis ENSPANG00000017158 I 0.000
ENSPFOG00000020694 Poecilia formosa ENSPFOG00000020694 N 0.000
ENSPPYG00000008884 Pongo abelii ENSPPYG00000008884 I 0.000
ENSSHAG00000004124 Sarcophilus harrisii ENSSHAG00000004124 I 0.000
ENSSTOG00000001607 Ictidomys tridecemlineatus ENSSTOG00000001607 I 0.000
ENSTRUG00000004645 Takifugu rubripes ENSTRUG00000004645 N 0.000
ENSXMAG00000018112 Xiphophorus maculatus ENSXMAG00000018112 N 0.000
LCUP010370 Lucilia cuprina LCUP010370 I 0.000
LLOJ007007 Lutzomyia longipalpis LLOJ007007 I 0.000
MESCA000017 Megaselia scalaris MESCA000017 I 0.000
NEMVEDRAFT_v1g101900 Nematostella vectensis NEMVEDRAFT_v1g101900 I 0.000
Ogr12594 Ophisaurus gracilis Ogr12594 I 0.000
PHUM453610 Pediculus humanus PHUM453610 I 0.000
PPAI004544 Phlebotomus papatasi PPAI004544 I 0.000
Pvit_13957 Pogona vitticeps Pvit_13957 I 0.000
RPRC004788 Rhodnius prolixus RPRC004788 I 0.000
Smp_066930 Schistosoma mansoni Smp_066930 I 0.000
SMRZ_0001697001 Schistosoma margrebowiei SMRZ_0001697001 I 0.000
SMTD_0000672001 Schistosoma mattheei SMTD_0000672001 I 0.000
SP6 Bos taurus ENSBTAG00000001825 I 0.000
SP6 Anolis carolinensis ENSACAG00000006831 I 0.000
SP6 Canis familiaris ENSCAFG00000016810 I 0.000
SP6 Dasypus novemcinctus ENSDNOG00000042665 I 0.000
SP6 Cavia porcellus ENSCPOG00000007638 I 0.000
SP6 Callithrix jacchus ENSCJAG00000007740 I 0.000
SP6 Pteropus vampyrus ENSPVAG00000004254 I 0.000
SP6 Oryctolagus cuniculus ENSOCUG00000023482 I 0.000
Sp6 Mus musculus ENSMUSG00000038560 I 0.000
SP6 Monodelphis domestica ENSMODG00000012454 I 0.000
SP6 Macaca mulatta ENSMMUG00000003011 I 0.000
SP6 Loxodonta africana ENSLAFG00000010701 I 0.000
SP6 Danio rerio ENSDARG00000099880 N 0.000
SP6 Echinops telfairi ENSETEG00000017017 I 0.000
SP6 Gorilla gorilla ENSGGOG00000004544 I 0.000
SP6 Homo sapiens ENSG00000189120 I 0.000
SP6 Felis catus ENSFCAG00000009363 I 0.000
SP6 Otolemur garnettii ENSOGAG00000030282 I 0.000
SP6 Ochotona princeps ENSOPRG00000004019 I 0.000
SP6 Pan troglodytes ENSPTRG00000009340 I 0.000
SP6 Equus caballus ENSECAG00000012853 I 0.000
SP6 Tursiops truncatus ENSTTRG00000012481 I 0.000
Sp6 Rattus norvegicus ENSRNOG00000023551 I 0.000
SP6 Sus scrofa ENSSSCG00000017522 I 0.000
SROB_0001082301 Schistosoma rodhaini SROB_0001082301 I 0.000
TASK_0000640901 Taenia asiatica TASK_0000640901 I 0.000
TC011697 Tribolium castaneum TC011697 I 0.000
tetur22g00570 Tetranychus urticae tetur22g00570 I 0.000
TRE_0000354701 Trichobilharzia regenti TRE_0000354701 I 0.000
TsM_000913800 Taenia solium TsM_000913800 I 0.000
TTAC_0000342701 Hydatigera taeniaeformis TTAC_0000342701 I 0.000
XP_002938068 Xenopus tropicalis XP_002938068 I 0.000
zgc:77358 Gasterosteus aculeatus ENSGACG00000018154 N 0.000
zgc:77358 Tetraodon nigroviridis ENSTNIG00000014142 N 0.000