POPTR_0001s21610 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0001s21610 T332116_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s21610.1 Sox 162 202

Links

Other Sox family TFs
Other Populus trichocarpa TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.741
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.656
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.656
F775_20121 Aegilops tauschii F775_20121 N 0.656
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.656
30116.m000393 Ricinus communis 30116.m000393 N 0.652
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.631
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.630
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.626
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.626
mgf013454m Mimulus guttatus mgf013454m N 0.622
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.622
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.622
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.622
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.622
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.622
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.622
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.622
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.622
mgf000387m Mimulus guttatus mgf000387m N 0.622
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.622
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.622
OS02G0770600 Oryza sativa OS02G0770600 N 0.622
OBART02G34050 Oryza barthii OBART02G34050 N 0.622
Si017699m.g Setaria italica Si017699m.g N 0.622
OB07G29110 Oryza brachyantha OB07G29110 N 0.622
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.622
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.616
OB02G40920 Oryza brachyantha OB02G40920 N 0.616
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.614
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.613
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.613
TCM_006422 Theobroma cacao TCM_006422 N 0.612
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.610
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.606
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.599
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.591
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.583
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.576
Cla002005 Citrullus lanatus Cla002005 N 0.576
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.576
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.572
PK16821.1 Cannabis sativa PK16821.1 N 0.570
PK04394.1 Cannabis sativa PK04394.1 N 0.568
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.567
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.562
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.558
MDP0000597087 Malus domestica MDP0000597087 N 0.547
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.523
MDP0000634922 Malus domestica MDP0000634922 N 0.508
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.505
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.458