POPTR_0003s13780 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0003s13780 T332122_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.514 0.702
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.514 0.702
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s13780.1 Sox 122 190
POPTR_0003s13780.1 Sox 240 306
POPTR_0003s13780.1 Sox 365 433

Links

Other Sox family TFs
Other Populus trichocarpa TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.641
TCM_016416 Theobroma cacao TCM_016416 I 0.624
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.620
Cla011101 Citrullus lanatus Cla011101 I 0.615
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.609
30190.m010807 Ricinus communis 30190.m010807 I 0.595
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.590
Pm024077 Prunus mume Pm024077 I 0.590
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.586
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.579
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.569
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.563
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.561
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.551
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.550
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.529
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.529
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.528
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.526
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.525
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.523
HMGB6 Arabidopsis thaliana AT4G23800 I 0.519
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.515
HMGB13 Arabidopsis thaliana AT4G11080 D 0.514
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.512
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.512
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.509
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.506
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.502
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.502
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.501
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.501
Bra035256 Brassica rapa Bra035256 I 0.492
PK10992.1 Cannabis sativa PK10992.1 I 0.488
Bra013731 Brassica rapa Bra013731 I 0.488
Bo1g037180 Brassica oleracea Bo1g037180 I 0.488
mgf015439m Mimulus guttatus mgf015439m I 0.483
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.482
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.480
MDP0000268093 Malus domestica MDP0000268093 I 0.479
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.477
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.476
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.457
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.448
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.438
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.434
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.433
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.429
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.423
Lus10033951.g Linum usitatissimum Lus10033951.g N 0.420