POPTR_0003s13780 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0003s13780 T332122_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.514 0.702
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.514 0.702
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s13780.1 Sox 122 190
POPTR_0003s13780.1 Sox 240 306
POPTR_0003s13780.1 Sox 365 433

Links

Other Sox family TFs
Other Populus trichocarpa TFs

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50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action