TF Information

POPTR_0004s12290 *(Populus trichocarpa)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00505 (HMG_box)	IPR000910	POPTR_0004s12290	T332124_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NHP6A M01566_2.00	Saccharomyces cerevisiae	NHRYWWWN	NWWWRYDN	PBM Zhu et al.(2009) Nhp6a	0.434	0.478
NHP6A M08606_2.00	Saccharomyces cerevisiae	DNDHNNWTATATADWRDNNDN	NHNNHYWHTATATAWNNDHNH	Misc DeBoer et al.(2011) YPR052C_879	0.434	0.478
NHP6B M01565_2.00	Saccharomyces cerevisiae	NNWHWRYDNN	NNHRYWDWNN	PBM Zhu et al.(2009) Nhp6b	0.434	0.449
NHP6B M08603_2.00	Saccharomyces cerevisiae	HNTHHNWWTATAWWWWRNDN	NHNYWWWWTATAWWNDDAND	Misc DeBoer et al.(2011) YBR089C-A_792	0.434	0.449
NCU02819 M02490_2.00	Neurospora crassa	NNHNNNNNRN	NYNNNNNDNN	PBM Weirauch et al.(2014) pTH9672	0.431	0.406
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0004s12290.1	Sox	559	627	PKRSKSAYVFFSQMERENVKKSNPGIVFGEITKALADKWNAMSAEEKEPYEEMARDDKQRYKSQVNDYK

Links
Other Sox family TFs
Other *Populus trichocarpa* TFs

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183 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action