XM_002306945.1 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0005s27390 T332127_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.633 0.710
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s27390.1 Sox 44 113
POPTR_0005s27390.2 Sox 44 79

Links

Other Sox family TFs
Other Populus trichocarpa TFs

Invalid Input OrderBy

422 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action