PPA09738 (Pristionchus pacificus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PPA09738 T332177_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
pop-1
M00712_2.00
Caenorhabditis elegans
NNHDWVNNNN

NNNNBWHDNN
PBM
Narasimhan et al.(2015)
pTH9135
0.508 0.609
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA09738 Sox 112 182

Links

Other Sox family TFs
Other Pristionchus pacificus TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
FRS1 Arabidopsis thaliana AT4G19990 N 0.000
Bo1g022120 Brassica oleracea Bo1g022120 N 0.000
Bostr.30275s0471 Boechera stricta Bostr.30275s0471 N 0.000
Cagra.2564s0022 Capsella grandiflora Cagra.2564s0022 N 0.000
Carubv10004190m.g Capsella rubella Carubv10004190m.g N 0.000
Cucsa.134500 Cucumis sativus Cucsa.134500 N 0.000
FRS1 Populus trichocarpa POPTR_0003s10970 N 0.000
SapurV1A.0325s0180 Salix purpurea SapurV1A.0325s0180 N 0.000
Solyc02g068550.1 Solanum lycopersicum Solyc02g068550.1 N 0.000
TCM_006022 Theobroma cacao TCM_006022 N 0.000
FRS1 Vitis vinifera VIT_01s0011g01470 N 0.000