CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RHTO_05868
(
Rhodosporidium toruloides
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
RHTO_05868
T332343_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
INO
M02485_2.00
Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN
PBM
Weirauch et al.(2014)
pTH7516
0.415
0.224
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EMS18471
Sox
23
72
TKKGKSSNYNAYMNTALSELKKADPALKHNDAFKKAMEMWKAEQKGKAAK
Links
Other
Sox
family TFs
Other
Rhodosporidium toruloides
TFs
78 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PSEUBRA_SCAF20g03069
Pseudozyma brasiliensis
PSEUBRA_SCAF20g03069
I
0.547
UHOR_08529
Ustilago hordei
UHOR_08529
I
0.517
UM06001
Ustilago maydis
UM06001
I
0.517
PaG_05633
Pseudozyma aphidis
PaG_05633
I
0.517
PAN0_018d5604
Pseudozyma antarctica
PAN0_018d5604
I
0.517
CND03770
Cryptococcus neoformans
CND03770
I
0.485
PILCRDRAFT_822980
Piloderma croceum
PILCRDRAFT_822980
I
0.466
K437DRAFT_256012
Tilletiaria anomala
K437DRAFT_256012
I
0.459
sr16632
Sporisorium reilianum
sr16632
I
0.455
Aquca_006_00412
Aquilegia coerulea
Aquca_006_00412
I
0.455
Cla000824
Citrullus lanatus
Cla000824
I
0.453
BOTBODRAFT_39377
Botryobasidium botryosum
BOTBODRAFT_39377
I
0.453
Cucsa.394330
Cucumis sativus
Cucsa.394330
I
0.453
EuGene.0000040541
Micromonas pusilla
EuGene.0000040541
I
0.448
GSMUA_Achr3G25660_001
Musa acuminata
GSMUA_Achr3G25660_001
I
0.448
E5Q_04235
Mixia osmundae
E5Q_04235
I
0.447
E5Q_04236
Mixia osmundae
E5Q_04236
I
0.447
BOTBODRAFT_110075
Botryobasidium botryosum
BOTBODRAFT_110075
N
0.443
GLOINDRAFT_342259
Rhizophagus irregularis
GLOINDRAFT_342259
I
0.443
GLOINDRAFT_337448
Rhizophagus irregularis
GLOINDRAFT_337448
I
0.442
POPTR_0008s09740
Populus trichocarpa
POPTR_0008s09740
I
0.442
SapurV1A.0176s0460
Salix purpurea
SapurV1A.0176s0460
I
0.442
GRMZM2G046829
Zea mays
GRMZM2G046829
I
0.437
Pavir.Bb03145
Panicum virgatum
Pavir.Bb03145
I
0.437
Pavir.Ba00601
Panicum virgatum
Pavir.Ba00601
I
0.437
SPPG_09438
Spizellomyces punctatus
SPPG_09438
I
0.436
EMIHUDRAFT_98817
Emiliania huxleyi
EMIHUDRAFT_98817
I
0.435
EMIHUDRAFT_114782
Emiliania huxleyi
EMIHUDRAFT_114782
I
0.435
M407DRAFT_28999
Tulasnella calospora
M407DRAFT_28999
N
0.434
M407DRAFT_126438
Tulasnella calospora
M407DRAFT_126438
I
0.432
BATDEDRAFT_7789
Batrachochytrium dendrobatidis
BATDEDRAFT_7789
I
0.430
e_gw1.1.2342.1
Heterobasidion annosum
e_gw1.1.2342.1
I
0.426
HETIRDRAFT_308278
Heterobasidion irregulare
HETIRDRAFT_308278
I
0.426
evm.TU.supercontig_69.72
Carica papaya
evm.TU.supercontig_69.72
I
0.421
AMAG_02504
Allomyces macrogynus
AMAG_02504
I
0.416
AMAG_00993
Allomyces macrogynus
AMAG_00993
I
0.416
mgf023167m
Mimulus guttatus
mgf023167m
I
0.416
AZW_EuGene.0200010417
Micromonas sp RCC299
AZW_EuGene.0200010417
I
0.416
GSMUA_Achr8G04750_001
Musa acuminata
GSMUA_Achr8G04750_001
I
0.416
GSMUA_Achr3G15060_001
Musa acuminata
GSMUA_Achr3G15060_001
I
0.416
GSMUA_Achr8G26600_001
Musa acuminata
GSMUA_Achr8G26600_001
I
0.416
orange1.1g037247m.g
Citrus sinensis
orange1.1g037247m.g
I
0.415
MDP0000263713
Malus domestica
MDP0000263713
I
0.415
SapurV1A.0069s0070
Salix purpurea
SapurV1A.0069s0070
I
0.415
Thhalv10008669m.g
Eutrema salsugineum
Thhalv10008669m.g
I
0.415
chr2.CM0008.270.nc
Lotus japonicus
chr2.CM0008.270.nc
I
0.415
SapurV1A.0269s0230
Salix purpurea
SapurV1A.0269s0230
I
0.415
MDP0000126221
Malus domestica
MDP0000126221
I
0.415
Carubv10012024m.g
Capsella rubella
Carubv10012024m.g
I
0.415
Lus10029135.g
Linum usitatissimum
Lus10029135.g
I
0.415
Cagra.0605s0067
Capsella grandiflora
Cagra.0605s0067
I
0.415
Bostr.12659s0203
Boechera stricta
Bostr.12659s0203
I
0.415
cassava41595.m1
Manihot esculenta
cassava41595.m1
I
0.415
Lus10013028.g
Linum usitatissimum
Lus10013028.g
I
0.415
POPTR_0010s05220
Populus trichocarpa
POPTR_0010s05220
I
0.415
GLYMA04G10125
Glycine max
GLYMA04G10125
I
0.415
GLYMA06G10110
Glycine max
GLYMA06G10110
I
0.415
GLYMA08G39290
Glycine max
GLYMA08G39290
I
0.415
GLYMA18G19720
Glycine max
GLYMA18G19720
I
0.415
INO
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1002152
I
0.415
BRADI1G57070
Brachypodium distachyon
BRADI1G57070
I
0.415
Bo5g039580
Brassica oleracea
Bo5g039580
I
0.415
Bo7g056180
Brassica oleracea
Bo7g056180
I
0.415
Bra012373
Brassica rapa
Bra012373
I
0.415
Bra024599
Brassica rapa
Bra024599
I
0.415
GSMUA_Achr3G30800_001
Musa acuminata
GSMUA_Achr3G30800_001
I
0.415
GSMUA_AchrUn_randomG19410_001
Musa acuminata
GSMUA_AchrUn_randomG19410_001
I
0.415
Ca_21472
Cicer arietinum
Ca_21472
I
0.415
Cla010239
Citrullus lanatus
Cla010239
I
0.415
Pm006709
Prunus mume
Pm006709
I
0.415
cassava26804.m1
Manihot esculenta
cassava26804.m1
I
0.415
INO
Vitis vinifera
VIT_01s0127g00330
I
0.415
Solyc05g005240.1
Solanum lycopersicum
Solyc05g005240.1
I
0.415
MTR_5g034030
Medicago truncatula
MTR_5g034030
I
0.415
INO
Arabidopsis thaliana
AT1G23420
D
0.415
PRUPE_ppa023883mg
Prunus persica
PRUPE_ppa023883mg
I
0.415
AMTR_s00096p00054100
Amborella trichopoda
AMTR_s00096p00054100
I
0.415
cassava27370.m1
Manihot esculenta
cassava27370.m1
I
0.415