RHTO_05868 (Rhodosporidium toruloides)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 RHTO_05868 T332343_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
INO
M02485_2.00
Arabidopsis thaliana
NHNNNYRNNN

NNNYRNNNDN
PBM
Weirauch et al.(2014)
pTH7516
0.415 0.224
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EMS18471 Sox 23 72

Links

Other Sox family TFs
Other Rhodosporidium toruloides TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PSEUBRA_SCAF20g03069 Pseudozyma brasiliensis PSEUBRA_SCAF20g03069 I 0.547
UHOR_08529 Ustilago hordei UHOR_08529 I 0.517
UM06001 Ustilago maydis UM06001 I 0.517
PaG_05633 Pseudozyma aphidis PaG_05633 I 0.517
PAN0_018d5604 Pseudozyma antarctica PAN0_018d5604 I 0.517
CND03770 Cryptococcus neoformans CND03770 I 0.485
PILCRDRAFT_822980 Piloderma croceum PILCRDRAFT_822980 I 0.466
K437DRAFT_256012 Tilletiaria anomala K437DRAFT_256012 I 0.459
sr16632 Sporisorium reilianum sr16632 I 0.455
Aquca_006_00412 Aquilegia coerulea Aquca_006_00412 I 0.455
Cla000824 Citrullus lanatus Cla000824 I 0.453
BOTBODRAFT_39377 Botryobasidium botryosum BOTBODRAFT_39377 I 0.453
Cucsa.394330 Cucumis sativus Cucsa.394330 I 0.453
EuGene.0000040541 Micromonas pusilla EuGene.0000040541 I 0.448
GSMUA_Achr3G25660_001 Musa acuminata GSMUA_Achr3G25660_001 I 0.448
E5Q_04235 Mixia osmundae E5Q_04235 I 0.447
E5Q_04236 Mixia osmundae E5Q_04236 I 0.447
BOTBODRAFT_110075 Botryobasidium botryosum BOTBODRAFT_110075 N 0.443
GLOINDRAFT_342259 Rhizophagus irregularis GLOINDRAFT_342259 I 0.443
GLOINDRAFT_337448 Rhizophagus irregularis GLOINDRAFT_337448 I 0.442
POPTR_0008s09740 Populus trichocarpa POPTR_0008s09740 I 0.442
SapurV1A.0176s0460 Salix purpurea SapurV1A.0176s0460 I 0.442
GRMZM2G046829 Zea mays GRMZM2G046829 I 0.437
Pavir.Bb03145 Panicum virgatum Pavir.Bb03145 I 0.437
Pavir.Ba00601 Panicum virgatum Pavir.Ba00601 I 0.437
SPPG_09438 Spizellomyces punctatus SPPG_09438 I 0.436
EMIHUDRAFT_98817 Emiliania huxleyi EMIHUDRAFT_98817 I 0.435
EMIHUDRAFT_114782 Emiliania huxleyi EMIHUDRAFT_114782 I 0.435
M407DRAFT_28999 Tulasnella calospora M407DRAFT_28999 N 0.434
M407DRAFT_126438 Tulasnella calospora M407DRAFT_126438 I 0.432
BATDEDRAFT_7789 Batrachochytrium dendrobatidis BATDEDRAFT_7789 I 0.430
e_gw1.1.2342.1 Heterobasidion annosum e_gw1.1.2342.1 I 0.426
HETIRDRAFT_308278 Heterobasidion irregulare HETIRDRAFT_308278 I 0.426
evm.TU.supercontig_69.72 Carica papaya evm.TU.supercontig_69.72 I 0.421
AMAG_02504 Allomyces macrogynus AMAG_02504 I 0.416
AMAG_00993 Allomyces macrogynus AMAG_00993 I 0.416
mgf023167m Mimulus guttatus mgf023167m I 0.416
AZW_EuGene.0200010417 Micromonas sp RCC299 AZW_EuGene.0200010417 I 0.416
GSMUA_Achr8G04750_001 Musa acuminata GSMUA_Achr8G04750_001 I 0.416
GSMUA_Achr3G15060_001 Musa acuminata GSMUA_Achr3G15060_001 I 0.416
GSMUA_Achr8G26600_001 Musa acuminata GSMUA_Achr8G26600_001 I 0.416
orange1.1g037247m.g Citrus sinensis orange1.1g037247m.g I 0.415
MDP0000263713 Malus domestica MDP0000263713 I 0.415
SapurV1A.0069s0070 Salix purpurea SapurV1A.0069s0070 I 0.415
Thhalv10008669m.g Eutrema salsugineum Thhalv10008669m.g I 0.415
chr2.CM0008.270.nc Lotus japonicus chr2.CM0008.270.nc I 0.415
SapurV1A.0269s0230 Salix purpurea SapurV1A.0269s0230 I 0.415
MDP0000126221 Malus domestica MDP0000126221 I 0.415
Carubv10012024m.g Capsella rubella Carubv10012024m.g I 0.415
Lus10029135.g Linum usitatissimum Lus10029135.g I 0.415
Cagra.0605s0067 Capsella grandiflora Cagra.0605s0067 I 0.415
Bostr.12659s0203 Boechera stricta Bostr.12659s0203 I 0.415
cassava41595.m1 Manihot esculenta cassava41595.m1 I 0.415
Lus10013028.g Linum usitatissimum Lus10013028.g I 0.415
POPTR_0010s05220 Populus trichocarpa POPTR_0010s05220 I 0.415
GLYMA04G10125 Glycine max GLYMA04G10125 I 0.415
GLYMA06G10110 Glycine max GLYMA06G10110 I 0.415
GLYMA08G39290 Glycine max GLYMA08G39290 I 0.415
GLYMA18G19720 Glycine max GLYMA18G19720 I 0.415
INO Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002152 I 0.415
BRADI1G57070 Brachypodium distachyon BRADI1G57070 I 0.415
Bo5g039580 Brassica oleracea Bo5g039580 I 0.415
Bo7g056180 Brassica oleracea Bo7g056180 I 0.415
Bra012373 Brassica rapa Bra012373 I 0.415
Bra024599 Brassica rapa Bra024599 I 0.415
GSMUA_Achr3G30800_001 Musa acuminata GSMUA_Achr3G30800_001 I 0.415
GSMUA_AchrUn_randomG19410_001 Musa acuminata GSMUA_AchrUn_randomG19410_001 I 0.415
Ca_21472 Cicer arietinum Ca_21472 I 0.415
Cla010239 Citrullus lanatus Cla010239 I 0.415
Pm006709 Prunus mume Pm006709 I 0.415
cassava26804.m1 Manihot esculenta cassava26804.m1 I 0.415
INO Vitis vinifera VIT_01s0127g00330 I 0.415
Solyc05g005240.1 Solanum lycopersicum Solyc05g005240.1 I 0.415
MTR_5g034030 Medicago truncatula MTR_5g034030 I 0.415
INO Arabidopsis thaliana AT1G23420 D 0.415
PRUPE_ppa023883mg Prunus persica PRUPE_ppa023883mg I 0.415
AMTR_s00096p00054100 Amborella trichopoda AMTR_s00096p00054100 I 0.415
cassava27370.m1 Manihot esculenta cassava27370.m1 I 0.415