scaffold_602413.1 (Arabidopsis lyrata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 scaffold_602413.1 T332437_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_602413.1 Sox 115 183

Links

Other Sox family TFs
Other Arabidopsis lyrata TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.447
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.601
HMGB7 Arabidopsis thaliana AT5G23420 N 0.741
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.567
Bo2g160920 Brassica oleracea Bo2g160920 I 0.534
Bo9g014140 Brassica oleracea Bo9g014140 I 0.605
Bra029371 Brassica rapa Bra029371 I 0.534
Bra026498 Brassica rapa Bra026498 I 0.605
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.594
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.594
Cla009222 Citrullus lanatus Cla009222 I 0.517
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.504
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.504
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.517
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.426
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.515
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.461
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.464
MDP0000205665 Malus domestica MDP0000205665 I 0.479
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.454
mgf009124m Mimulus guttatus mgf009124m N 0.504
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.417
OBART08G00070 Oryza barthii OBART08G00070 I 0.462
OB08G10120 Oryza brachyantha OB08G10120 N 0.480
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.462
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.462
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.462
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.462
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.462
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.462
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.462
OS08G0101100 Oryza sativa OS08G0101100 I 0.462
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.450
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.449
Pm006054 Prunus mume Pm006054 I 0.498
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.498
30131.m007272 Ricinus communis 30131.m007272 I 0.465
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.487
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.458
TCM_007659 Theobroma cacao TCM_007659 I 0.470
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.468
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.431