CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SCHCODRAFT_238903
(
Schizophyllum commune
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
SCHCODRAFT_238903
T332463_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.477
0.362
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.477
0.362
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.456
0.406
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.456
0.406
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN
NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.456
0.406
ROX1
M11346_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.456
0.406
ROX1
M11347_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.456
0.406
SRY
M03525_2.00
Homo sapiens
AACAATANCATTGTT
AACAATGNTATTGTT
SELEX
Jolma et al.(2013)
SRY_1
0.443
0.304
SRY
M03526_2.00
Homo sapiens
AACAATHHNCATTGTT
AACAATGNDDATTGTT
SELEX
Jolma et al.(2013)
SRY_2
0.443
0.304
SRY
M03527_2.00
Homo sapiens
TCAATAMCATTGA
TCAATGKTATTGA
SELEX
Jolma et al.(2013)
SRY_3
0.443
0.304
SRY
M03528_2.00
Homo sapiens
TGAATANCATTCA
TGAATGNTATTCA
SELEX
Jolma et al.(2013)
SRY_4
0.443
0.304
SRY
M05898_2.00
Homo sapiens
NACAATNV
BNATTGTN
SMiLE-seq
Isakova et al.(2017)
SRY
0.443
0.304
SRY
M02717_2.00
Homo sapiens
NDWAACAAW
WTTGTWWHN
SELEX
Mathelier et al.(2014)
MA0084.1
0.443
0.304
SRY
M09398_2.00
Homo sapiens
BWTTGTTWH
DWAACAAWV
Misc
Kulakovskiy et al.(2013)
SRY_HUMAN.H11MO.0.B
0.443
0.304
SRY
M11331_2.00
Homo sapiens
AAWSWMM
KKWSWTT
Transfac
Matys et al.(2006)
V$SRY_01
0.443
0.304
SRY
M11332_2.00
Homo sapiens
HBHWTTGTTWDN
NHWAACAAWDVD
Transfac
Matys et al.(2006)
V$SRY_02
0.443
0.304
SRY
M11333_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRY_Q6
0.443
0.304
Sox6
M00828_2.00
Mus musculus
WTTGTNNNN
NNNNACAAW
PBM
Weirauch et al.(2013)
pTH3862
0.441
0.333
SOX6
M05892_2.00
Homo sapiens
DRACAATRVN
NBYATTGTYH
SMiLE-seq
Isakova et al.(2017)
SOX6
0.441
0.333
Sox6
M08169_2.00
Mus musculus
BCWTTGTYYY
RRRACAAWGV
ChIP-seq
Mathelier et al.(2014)
MA0515.1
0.441
0.333
Sox6
M09640_2.00
Mus musculus
BHWTTGTBNN
NNVACAAWDV
Misc
Heinz et al.(2010)
Myotubes-Sox6_GSE32627
0.441
0.333
SOX6
M11300_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX6_Q5
0.441
0.333
Sox5
M00203_2.00
Mus musculus
ATTGTBNN
NNVACAAT
PBM
Badis et al.(2009)
Sox5_3459
0.435
0.333
Sox13
M00212_2.00
Mus musculus
RAACAATW
WATTGTTY
PBM
Badis et al.(2009)
Sox13_1718
0.435
0.333
SOX5
M05894_2.00
Homo sapiens
DVACAATRVN
NBYATTGTBH
SMiLE-seq
Isakova et al.(2017)
SOX5
0.435
0.333
Sox5
M02719_2.00
Mus musculus
NAACAAT
ATTGTTN
SELEX
Mathelier et al.(2014)
MA0087.1
0.435
0.333
SOX13
M08166_2.00
Homo sapiens
NNACAATGVNN
NNBCATTGTNN
ChIP-seq
Mathelier et al.(2014)
MA1120.1
0.435
0.333
SOX5
M09390_2.00
Homo sapiens
NAACAATN
NATTGTTN
Misc
Kulakovskiy et al.(2013)
SOX5_HUMAN.H11MO.0.C
0.435
0.333
Sox5
M09404_2.00
Mus musculus
NAACAATN
NATTGTTN
Misc
Kulakovskiy et al.(2013)
SOX5_MOUSE.H11MO.0.C
0.435
0.333
SOX5
M11309_2.00
Homo sapiens
NNAACAATNN
NNATTGTTNN
Transfac
Matys et al.(2006)
V$SOX5_01
0.435
0.333
SOX5
M11310_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX5_Q5
0.435
0.333
Sox7
M00209_2.00
Mus musculus
NNNWBAAT
ATTVWNNN
PBM
Badis et al.(2009)
Sox7_3460
0.428
0.304
SOX7
M03516_2.00
Homo sapiens
AACAATRDNHAKTGTT
AACAMTDNHYATTGTT
SELEX
Jolma et al.(2013)
SOX7_1
0.428
0.304
SOX7
M03517_2.00
Homo sapiens
DAACAATKDYAKTGTTN
NAACAMTRHMATTGTTH
SELEX
Jolma et al.(2013)
SOX7_2
0.428
0.304
SOX7
M03518_2.00
Homo sapiens
NATGAATKDCAKTCATN
NATGAMTGHMATTCATN
SELEX
Jolma et al.(2013)
SOX7_3
0.428
0.304
SOX7
M05787_2.00
Homo sapiens
ACAATDNHATTGT
ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_HT-SELEX
0.428
0.304
SOX7
M11325_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX7_Q2
0.428
0.304
SOX7
M05788_2.00
Homo sapiens
ACAATDNHATTGT
ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_Methyl-HT-SELEX
0.428
0.304
Sox15
M03973_2.00
Drosophila melanogaster
WYTGTTCGGTD
HACCGAACARW
SELEX
Nitta et al.(2015)
Sox15_1
0.425
0.290
Sox15
M03974_2.00
Drosophila melanogaster
VACAATDNCATTGTN
NACAATGNHATTGTB
SELEX
Nitta et al.(2015)
Sox15_2
0.425
0.290
Sox15
M06450_2.00
Drosophila melanogaster
RWACAATR
YATTGTWY
B1H
Zhu et al.(2011)
Sox15_SANGER_5_FBgn0005613
0.425
0.290
Sox17
M00199_2.00
Mus musculus
NNNNWSAAT
ATTSWNNNN
PBM
Badis et al.(2009)
Sox17_2837
0.418
0.290
Sox18
M00204_2.00
Mus musculus
NNNWBAAT
ATTVWNNN
PBM
Badis et al.(2009)
Sox18_3506
0.418
0.290
SOX18
M03529_2.00
Homo sapiens
AACAATDNCATTGTT
AACAATGNHATTGTT
SELEX
Jolma et al.(2013)
SOX18_1
0.418
0.290
SOX18
M03530_2.00
Homo sapiens
ATCAATWDCATTGAT
ATCAATGHWATTGAT
SELEX
Jolma et al.(2013)
SOX18_2
0.418
0.290
SOX18
M03531_2.00
Homo sapiens
ATGAATWYCATTCAT
ATGAATGRWATTCAT
SELEX
Jolma et al.(2013)
SOX18_3
0.418
0.290
Sox17
M03533_2.00
Mus musculus
AACAATWDCATTGTT
AACAATGHWATTGTT
SELEX
Jolma et al.(2013)
Sox17_1
0.418
0.290
Sox17
M03534_2.00
Mus musculus
ATGAATWNCATTCAT
ATGAATGNWATTCAT
SELEX
Jolma et al.(2013)
Sox17_2
0.418
0.290
SOX18
M05791_2.00
Homo sapiens
VACRAYGV
BCRTYGTB
SELEX
Yin et al.(2017)
SOX18_eDBD_HT-SELEX
0.418
0.290
SOX17
M05896_2.00
Homo sapiens
DRACAATRVN
NBYATTGTYH
SMiLE-seq
Isakova et al.(2017)
SOX17
0.418
0.290
Sox17
M02718_2.00
Mus musculus
SACAATRNN
NNYATTGTS
SELEX
Mathelier et al.(2014)
MA0078.1
0.418
0.290
Sox17
M08040_2.00
Mus musculus
RVACAAWRRVN
NBYYWTTGTBY
ChIP-seq
Chen et al.(2011)
GSE19026_Sox17_XENcells
0.418
0.290
SOX17
M09396_2.00
Homo sapiens
BCCATTKTNBN
NVNAMAATGGV
Misc
Kulakovskiy et al.(2013)
SOX17_HUMAN.H11MO.0.C
0.418
0.290
SOX17
M11323_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX17_01
0.418
0.290
SOX17
M11324_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX17_Q2
0.418
0.290
SOX18
M11334_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5_01
0.418
0.290
SOX18
M11335_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5
0.418
0.290
SOX18
M05792_2.00
Homo sapiens
BYATTGTN
NACAATRV
SELEX
Yin et al.(2017)
SOX18_eDBD_Methyl-HT-SELEX
0.418
0.290
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFI91017
Sox
49
118
IPRPANAFILFRADFTRNHTLPDGIERRNGTLSKIASSEWKNLSPEGRGLWYRRADEAKIAHQARYPDYK
Links
Other
Sox
family TFs
Other
Schizophyllum commune
TFs
800 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy