CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SCLCIDRAFT_120630
(
Scleroderma citrinum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
SCLCIDRAFT_120630
T332479_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Bbx
M00196_2.00
Mus musculus
TTCATTGA
TCAATGAA
PBM
Badis et al.(2009)
Bbx_3753
0.495
0.333
BBX
M05763_2.00
Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA
SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX
0.461
0.319
BBX
M05764_2.00
Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA
SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX
0.461
0.319
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KIM61945
Sox
100
169
VPRPRNAFMLFRSAFAAAQKISTNIEHDNRHITRIIAHCWNRLSEADKQVWRDKAAAEKAQHTAKYPNYR
Links
Other
Sox
family TFs
Other
Scleroderma citrinum
TFs
225 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AALB001606
Anopheles albimanus
AALB001606
N
0.000
AARA011879
Anopheles arabiensis
AARA011879
N
0.000
AATE007259
Anopheles atroparvus
AATE007259
N
0.000
ACUA014539
Anopheles culicifacies
ACUA014539
N
0.000
ADAC005636
Anopheles darlingi
ADAC005636
N
0.000
AEPI003827
Anopheles epiroticus
AEPI003827
N
0.000
AFAF020126
Anopheles farauti
AFAF020126
N
0.000
AFUN005288
Anopheles funestus
AFUN005288
N
0.000
AGAP009500
Anopheles gambiae
AGAP009500
N
0.000
AMEC022544
Anopheles melas
AMEC022544
N
0.000
AMIN001873
Anopheles minimus
AMIN001873
N
0.000
AQUA003260
Anopheles quadriannulatus
AQUA003260
N
0.000
ASIS016482
Anopheles sinensis
ASIS016482
N
0.000
ASTEI03841
Anopheles stephensi
ASTEI03841
N
0.000