SCLCIDRAFT_120630 (Scleroderma citrinum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 SCLCIDRAFT_120630 T332479_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Bbx
M00196_2.00
Mus musculus
TTCATTGA

TCAATGAA
PBM
Badis et al.(2009)
Bbx_3753
0.495 0.333
BBX
M05763_2.00
Homo sapiens
TGAWCDNYGWTCA

TGAWCRNHGWTCA
SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX
0.461 0.319
BBX
M05764_2.00
Homo sapiens
TGAACDNYGTTCA

TGAACRNHGTTCA
SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX
0.461 0.319
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KIM61945 Sox 100 169

Links

Other Sox family TFs
Other Scleroderma citrinum TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AALB001606 Anopheles albimanus AALB001606 N 0.000
AARA011879 Anopheles arabiensis AARA011879 N 0.000
AATE007259 Anopheles atroparvus AATE007259 N 0.000
ACUA014539 Anopheles culicifacies ACUA014539 N 0.000
ADAC005636 Anopheles darlingi ADAC005636 N 0.000
AEPI003827 Anopheles epiroticus AEPI003827 N 0.000
AFAF020126 Anopheles farauti AFAF020126 N 0.000
AFUN005288 Anopheles funestus AFUN005288 N 0.000
AGAP009500 Anopheles gambiae AGAP009500 N 0.000
AMEC022544 Anopheles melas AMEC022544 N 0.000
AMIN001873 Anopheles minimus AMIN001873 N 0.000
AQUA003260 Anopheles quadriannulatus AQUA003260 N 0.000
ASIS016482 Anopheles sinensis ASIS016482 N 0.000
ASTEI03841 Anopheles stephensi ASTEI03841 N 0.000