CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SETTUDRAFT_174840
(
Setosphaeria turcica
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
SETTUDRAFT_174840
T332536_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.537
0.406
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.537
0.406
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.469
0.449
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.469
0.449
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN
NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.469
0.449
ROX1
M11346_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.469
0.449
ROX1
M11347_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.469
0.449
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.442
0.377
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.442
0.377
fmf-1
M02491_2.00
Neurospora crassa
TCTTTGTY
RACAAAGA
PBM
Weirauch et al.(2014)
pTH8941
0.438
0.319
SOX15
M03508_2.00
Homo sapiens
AACAATAMCATTGTT
AACAATGKTATTGTT
SELEX
Jolma et al.(2013)
SOX15_1
0.431
0.362
SOX15
M03509_2.00
Homo sapiens
ATCAATAMCATTGAT
ATCAATGKTATTGAT
SELEX
Jolma et al.(2013)
SOX15_2
0.431
0.362
SOX15
M03510_2.00
Homo sapiens
ATGAATAACATTCAT
ATGAATGTTATTCAT
SELEX
Jolma et al.(2013)
SOX15_3
0.431
0.362
SOX15
M05893_2.00
Homo sapiens
YYWTTGTNHN
NDNACAAWRR
SMiLE-seq
Isakova et al.(2017)
SOX15
0.431
0.362
SOX15
M11308_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX15_Q3
0.431
0.362
Sox15
M00202_2.00
Mus musculus
WTTVWNNNN
NNNNWBAAW
PBM
Badis et al.(2009)
Sox15_3457
0.431
0.348
egl-13
M00710_2.00
Caenorhabditis elegans
NNAACAATWN
NWATTGTTNN
PBM
Narasimhan et al.(2015)
pTH9125
0.424
0.362
Sox102F
M03981_2.00
Drosophila melanogaster
ATTGTTCGGTGKN
NMCACCGAACAAT
SELEX
Nitta et al.(2015)
Sox102F_1
0.424
0.362
Sox102F
M03982_2.00
Drosophila melanogaster
NAACAATDDCATTGTTN
NAACAATGHHATTGTTN
SELEX
Nitta et al.(2015)
Sox102F_2
0.424
0.362
SRY
M03525_2.00
Homo sapiens
AACAATANCATTGTT
AACAATGNTATTGTT
SELEX
Jolma et al.(2013)
SRY_1
0.419
0.377
SRY
M03526_2.00
Homo sapiens
AACAATHHNCATTGTT
AACAATGNDDATTGTT
SELEX
Jolma et al.(2013)
SRY_2
0.419
0.377
SRY
M03527_2.00
Homo sapiens
TCAATAMCATTGA
TCAATGKTATTGA
SELEX
Jolma et al.(2013)
SRY_3
0.419
0.377
SRY
M03528_2.00
Homo sapiens
TGAATANCATTCA
TGAATGNTATTCA
SELEX
Jolma et al.(2013)
SRY_4
0.419
0.377
SRY
M05898_2.00
Homo sapiens
NACAATNV
BNATTGTN
SMiLE-seq
Isakova et al.(2017)
SRY
0.419
0.377
SRY
M02717_2.00
Homo sapiens
NDWAACAAW
WTTGTWWHN
SELEX
Mathelier et al.(2014)
MA0084.1
0.419
0.377
SRY
M09398_2.00
Homo sapiens
BWTTGTTWH
DWAACAAWV
Misc
Kulakovskiy et al.(2013)
SRY_HUMAN.H11MO.0.B
0.419
0.377
SRY
M11331_2.00
Homo sapiens
AAWSWMM
KKWSWTT
Transfac
Matys et al.(2006)
V$SRY_01
0.419
0.377
SRY
M11332_2.00
Homo sapiens
HBHWTTGTTWDN
NHWAACAAWDVD
Transfac
Matys et al.(2006)
V$SRY_02
0.419
0.377
SRY
M11333_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRY_Q6
0.419
0.377
Sry
M00211_2.00
Mus musculus
ATTRTNNNNN
NNNNNAYAAT
PBM
Badis et al.(2009)
Sry_2833
0.419
0.348
Sry
M09408_2.00
Mus musculus
BWTTGTTWH
DWAACAAWV
Misc
Kulakovskiy et al.(2013)
SRY_MOUSE.H11MO.0.B
0.419
0.348
Sox30
M00201_2.00
Mus musculus
ATTRTBNNNN
NNNNVAYAAT
PBM
Badis et al.(2009)
Sox30_2781
0.417
0.362
SOX30
M05753_2.00
Homo sapiens
NRACAATN
NATTGTYN
SELEX
Yin et al.(2017)
SOX30_eDBD_HT-SELEX
0.417
0.362
SOX30
M05754_2.00
Homo sapiens
BATTGTYN
NRACAATV
SELEX
Yin et al.(2017)
SOX30_eDBD_Methyl-HT-SELEX
0.417
0.362
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOA90658
Sox
504
572
IPRPRNAFILYRQHHQQAIIARNPGLNNPDISKIIGEQWKAESEKERKVWQDLAQQEKARHHEQYPDYR
Links
Other
Sox
family TFs
Other
Setosphaeria turcica
TFs
787 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy