CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si007288m.g
(
Setaria italica
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Si007288m.g
T332540_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.451
0.696
NHP6A
M01566_2.00
Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN
PBM
Zhu et al.(2009)
Nhp6a
0.443
0.420
YAB1
M00890_2.00
Arabidopsis thaliana
AATAATWA
TWATTATT
PBM
Franco-Zorrilla et al.(2014)
YAB1
0.433
0.283
NHP6A
M08606_2.00
Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH
Misc
DeBoer et al.(2011)
YPR052C_879
0.443
0.420
YAB5
M02486_2.00
Arabidopsis thaliana
NNNNHRN
NYDNNNN
PBM
Weirauch et al.(2014)
pTH7575
0.433
0.261
NHP6B
M01565_2.00
Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN
PBM
Zhu et al.(2009)
Nhp6b
0.437
0.391
YAB5
M00889_2.00
Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN
PBM
Franco-Zorrilla et al.(2014)
YAB5
0.433
0.261
NHP6B
M08603_2.00
Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND
Misc
DeBoer et al.(2011)
YBR089C-A_792
0.437
0.391
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si007288m
Sox
92
161
PKRAPSAFFVFMEEFRKEFKEKNPKNKSVAEVGKAAGNRWKSLTDADKAPYVAKANKLKSEYNKAIAAYN
Si007293m
Sox
92
161
PKRAPSAFFVFMEEFRKEFKEKNPKNKSVAEVGKAAGNRWKSLTDADKAPYVAKANKLKSEYNKAIAAYN
Si007368m
Sox
92
138
PKRAPSAFFVFMEEFRKEFKEKNPKNKSVAEVGKAAGNRWKSLTDAV
Links
Other
Sox
family TFs
Other
Setaria italica
TFs
746 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy