Si017040m.g (Setaria italica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Si017040m.g T332544_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.443 0.629
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.443 0.629
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si017040m Sox 166 231
Si017040m Sox 288 354
Si017040m Sox 413 481

Links

Other Sox family TFs
Other Setaria italica TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.689
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.665
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.655
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.655
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.644
OB02G19930 Oryza brachyantha OB02G19930 N 0.593
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.592
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.583
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.581
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.565
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.565
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.565
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.565
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.565
OBART02G11160 Oryza barthii OBART02G11160 I 0.565
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.553
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.545
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.507
mgf015439m Mimulus guttatus mgf015439m I 0.492
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.474
Cla011101 Citrullus lanatus Cla011101 I 0.472
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.472
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.464
TCM_016416 Theobroma cacao TCM_016416 I 0.458
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.457
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.451
F775_10696 Aegilops tauschii F775_10696 N 0.450
30190.m010807 Ricinus communis 30190.m010807 I 0.448
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.446
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.444
HMGB13 Arabidopsis thaliana AT4G11080 D 0.443
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.440
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.440
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.439
Pm024077 Prunus mume Pm024077 I 0.439
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.439
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.437
PK10992.1 Cannabis sativa PK10992.1 I 0.436
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.431
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.429
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.425
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.421
Bra035256 Brassica rapa Bra035256 I 0.420
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.420
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.420