CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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sr16632
(
Sporisorium reilianum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
sr16632
T332767_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YAB5
M02486_2.00
Arabidopsis thaliana
NNNNHRN
NYDNNNN
PBM
Weirauch et al.(2014)
pTH7575
0.464
0.327
YAB5
M00889_2.00
Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN
PBM
Franco-Zorrilla et al.(2014)
YAB5
0.464
0.327
YAB1
M00890_2.00
Arabidopsis thaliana
AATAATWA
TWATTATT
PBM
Franco-Zorrilla et al.(2014)
YAB1
0.464
0.327
INO
M02485_2.00
Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN
PBM
Weirauch et al.(2014)
pTH7516
0.450
0.388
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBQ71283
Sox
12
60
KKAKTSAYNKYMKEQLAKLKNDKPAMSHKERFKLAATSWASSKENPKNK
Links
Other
Sox
family TFs
Other
Sporisorium reilianum
TFs
434 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy