TCM_018380 (Theobroma cacao)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 TCM_018380 T332830_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NHP6A
M01566_2.00
Saccharomyces cerevisiae
NHRYWWWN

NWWWRYDN
PBM
Zhu et al.(2009)
Nhp6a
0.499 0.565
NHP6A
M08606_2.00
Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN

NHNNHYWHTATATAWNNDHNH
Misc
DeBoer et al.(2011)
YPR052C_879
0.499 0.565
NHP6B
M01565_2.00
Saccharomyces cerevisiae
NNWHWRYDNN

NNHRYWDWNN
PBM
Zhu et al.(2009)
Nhp6b
0.492 0.507
NHP6B
M08603_2.00
Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN

NHNYWWWWTATAWWNDDAND
Misc
DeBoer et al.(2011)
YBR089C-A_792
0.492 0.507
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.432 0.406
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY03380 Sox 556 624
EOY03381 Sox 556 624
EOY03382 Sox 556 600

Links

Other Sox family TFs
Other Theobroma cacao TFs

Invalid Input OrderBy

469 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action