CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_021706
(
Theobroma cacao
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
TCM_021706
T332831_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.631
0.739
NHP6A
M01566_2.00
Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN
PBM
Zhu et al.(2009)
Nhp6a
0.434
0.478
NHP6A
M08606_2.00
Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH
Misc
DeBoer et al.(2011)
YPR052C_879
0.434
0.478
NHP6B
M01565_2.00
Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN
PBM
Zhu et al.(2009)
Nhp6b
0.434
0.449
NHP6B
M08603_2.00
Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND
Misc
DeBoer et al.(2011)
YBR089C-A_792
0.434
0.449
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY07223
Sox
53
122
PKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAPYEAKAAKRKADYEKQMNAYN
EOY07224
Sox
53
122
PKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAPYEAKAAKRKADYEKQMNAYN
EOY07225
Sox
53
122
PKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAPYEAKAAKRKADYEKQMNAYN
EOY07226
Sox
53
122
PKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAPYEAKAAKRKADYEKQMNAYN
EOY07227
Sox
53
122
PKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAPYEAKAAKRKADYEKQMNAYN
EOY07228
Sox
53
122
PKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAPYEAKAAKRKADYEKQMNAYN
EOY07229
Sox
53
122
PKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAPYEAKAAKRKADYEKQMNAYN
EOY07230
Sox
53
122
PKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAPYEAKAAKRKADYEKQMNAYN
Links
Other
Sox
family TFs
Other
Theobroma cacao
TFs
361 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy