TCM_042534 (Theobroma cacao)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 TCM_042534 T332837_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.581 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY17820 Sox 56 105
EOY17820 Sox 102 161
EOY17821 Sox 56 125
EOY17822 Sox 56 105

Links

Other Sox family TFs
Other Theobroma cacao TFs

Invalid Input OrderBy

343 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action