Traes_2AL_72F4E1905 (Triticum aestivum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Traes_2AL_72F4E1905 T332977_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.431 0.592
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.431 0.592
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_2AL_72F4E1905.1 Sox 35 99
Traes_2AL_72F4E1905.1 Sox 157 223
Traes_2AL_72F4E1905.1 Sox 283 351

Links

Other Sox family TFs
Other Triticum aestivum TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HMGB13 Arabidopsis thaliana AT4G11080 D 0.431
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.614
Si017040m.g Setaria italica Si017040m.g I 0.545
TCM_016416 Theobroma cacao TCM_016416 I 0.440
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.450
Cla011101 Citrullus lanatus Cla011101 I 0.427
mgf015439m Mimulus guttatus mgf015439m I 0.501
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.486
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.428
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.420
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.428
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.435
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.602
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.592
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.547
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.543
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.547
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.614
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.418
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.597
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.443
OBART02G11160 Oryza barthii OBART02G11160 I 0.547
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.547
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.547
OB02G19930 Oryza brachyantha OB02G19930 N 0.530
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.521
Traes_2BL_0F18ED637 Triticum aestivum Traes_2BL_0F18ED637 N 0.426
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.535
F775_10696 Aegilops tauschii F775_10696 N 0.552
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.540
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.609