Traes_6AL_9EC9874F1 (Triticum aestivum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Traes_6AL_9EC9874F1 T333003_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.440 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_6AL_9EC9874F1.1 Sox 34 103

Links

Other Sox family TFs
Other Triticum aestivum TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29669.m000844 Ricinus communis 29669.m000844 I 0.450
29701.m000600 Ricinus communis 29701.m000600 I 0.449
30170.m014386 Ricinus communis 30170.m014386 I 0.469
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.479
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.474
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.430
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.425
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.452
HMGB2 Arabidopsis thaliana AT1G20693 I 0.462
HMGB3 Arabidopsis thaliana AT1G20696 I 0.433
HMGB4 Arabidopsis thaliana AT2G17560 I 0.476
HMGB1 Arabidopsis thaliana AT3G51880 I 0.438
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.672
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.457
Bo1g006360 Brassica oleracea Bo1g006360 I 0.468
Bo5g030580 Brassica oleracea Bo5g030580 I 0.462
Bo7g014280 Brassica oleracea Bo7g014280 I 0.457
Bo7g061420 Brassica oleracea Bo7g061420 I 0.441
Bo7g101270 Brassica oleracea Bo7g101270 I 0.434
Bo7g117500 Brassica oleracea Bo7g117500 I 0.468
Bo8g070350 Brassica oleracea Bo8g070350 I 0.441
Bo8g081200 Brassica oleracea Bo8g081200 I 0.432
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.478
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.438
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.433
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.462
Bra002073 Brassica rapa Bra002073 I 0.449
Bra011624 Brassica rapa Bra011624 I 0.468
Bra017723 Brassica rapa Bra017723 I 0.468
Bra025838 Brassica rapa Bra025838 I 0.434
Bra037266 Brassica rapa Bra037266 I 0.483
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.500
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.676
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.425
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.438
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.478
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.430
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.433
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.462
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.430
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.462
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.433
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.478
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.426
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.433
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.437
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.469
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.469
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.469
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.452
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.488
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.469
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.442
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.442
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.442
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.442
Ca_04825 Cicer arietinum Ca_04825 I 0.465
Ca_09896 Cicer arietinum Ca_09896 I 0.416
Ca_10725 Cicer arietinum Ca_10725 I 0.473
Ca_19340 Cicer arietinum Ca_19340 I 0.467
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.507
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.423
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.464
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.446
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.481
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.472
Cla009093 Citrullus lanatus Cla009093 I 0.469
Cla018386 Citrullus lanatus Cla018386 I 0.507
Cla023817 Citrullus lanatus Cla023817 I 0.499
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.517
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.499
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.469
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.416
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.473
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.467
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.467
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.483
F775_27510 Aegilops tauschii F775_27510 I 0.500
F775_30706 Aegilops tauschii F775_30706 I 0.741
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.438
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.462
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.433
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.478
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.469
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.433
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.499
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.473
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.507
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.474
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.474
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.448
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.448
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.446
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.464
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.473
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.469
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.465
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.469
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.659
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.436
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.595
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.500
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.523
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.496
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.496
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.539
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.512
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.574
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.496
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.476
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.496
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.438
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.659
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.493
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.423
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.423
MDP0000275042 Malus domestica MDP0000275042 I 0.457
MDP0000362980 Malus domestica MDP0000362980 I 0.452
MDP0000607529 Malus domestica MDP0000607529 I 0.427
MDP0000757111 Malus domestica MDP0000757111 I 0.452
mgf009330m Mimulus guttatus mgf009330m I 0.431
mgf016363m Mimulus guttatus mgf016363m I 0.467
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.672
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.500
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.424
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.449
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.486
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.438
OB02G34710 Oryza brachyantha OB02G34710 N 0.672
OB06G35870 Oryza brachyantha OB06G35870 I 0.500
OBART02G27340 Oryza barthii OBART02G27340 N 0.672
OBART06G28090 Oryza barthii OBART06G28090 I 0.493
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.672
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.493
OLONG_000335 Oryza longistaminata OLONG_000335 N 0.436
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.493
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.672
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.493
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.672
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.493
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.672
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.493
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.472
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.446
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.464
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.468
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.493
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.672
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.493
OS02G0670400 Oryza sativa OS02G0670400 N 0.672
OS06G0728000 Oryza sativa OS06G0728000 I 0.493
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.436
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.436
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.493
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.493
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.685
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.685
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.452
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.464
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.473
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.429
PK11149.1 Cannabis sativa PK11149.1 I 0.489
PK29786.1 Cannabis sativa PK29786.1 I 0.499
Pm002934 Prunus mume Pm002934 I 0.483
Pm018913 Prunus mume Pm018913 I 0.452
Pm026798 Prunus mume Pm026798 I 0.440
PMAA_044390 Talaromyces marneffei PMAA_044390 N 0.420
PMAA_044390 Penicillium marneffei PMAA_044390 N 0.420
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.462
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.463
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.462
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.473
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.479
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.483
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.442
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.452
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.442
HMG-1 Pisum sativum Q41026_PEA D 0.440
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.433
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.511
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.465
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.462
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.473
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.511
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.436
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.626
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.500
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.429
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.434
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.434
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.429
Si007288m.g Setaria italica Si007288m.g I 0.493
Si018635m.g Setaria italica Si018635m.g N 0.657
Si031512m.g Setaria italica Si031512m.g I 0.436
SNAPOd2T00000370001 Oikopleura dioica SNAPOd2T00000370001 N 0.450
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.464
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.439
TCM_000068 Theobroma cacao TCM_000068 I 0.452
TCM_021706 Theobroma cacao TCM_021706 I 0.501
TCM_034406 Theobroma cacao TCM_034406 I 0.464
TCM_042534 Theobroma cacao TCM_042534 I 0.439
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.462
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.457
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.444
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.483
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.462
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.425
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.425
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.741
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.741
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.500
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.741
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.454
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.473
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.506
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.454