Traes_6BL_017F7FCF8 (Triticum aestivum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Traes_6BL_017F7FCF8 T333004_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.440 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_6BL_017F7FCF8.1 Sox 34 103

Links

Other Sox family TFs
Other Triticum aestivum TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.741
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.741
F775_30706 Aegilops tauschii F775_30706 I 0.741
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.741
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.685
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.685
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.676
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.672
OB02G34710 Oryza brachyantha OB02G34710 N 0.672
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.672
OS02G0670400 Oryza sativa OS02G0670400 N 0.672
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.672
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.672
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.672
OBART02G27340 Oryza barthii OBART02G27340 N 0.672
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.672
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.672
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.659
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.659
Si018635m.g Setaria italica Si018635m.g N 0.657
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.626
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.595
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.574
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.539
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.523
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.517
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.512
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.511
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.511
Cla018386 Citrullus lanatus Cla018386 I 0.507
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.507
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.507
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.506
TCM_021706 Theobroma cacao TCM_021706 I 0.501
F775_27510 Aegilops tauschii F775_27510 I 0.500
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.500
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.500
OB06G35870 Oryza brachyantha OB06G35870 I 0.500
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.500
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.500
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.500
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.499
PK29786.1 Cannabis sativa PK29786.1 I 0.499
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.499
Cla023817 Citrullus lanatus Cla023817 I 0.499
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.496
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.496
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.496
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.496
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.493
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.493
OBART06G28090 Oryza barthii OBART06G28090 I 0.493
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.493
OS06G0728000 Oryza sativa OS06G0728000 I 0.493
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.493
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.493
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.493
Si007288m.g Setaria italica Si007288m.g I 0.493
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.493
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.493
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.493
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.493
PK11149.1 Cannabis sativa PK11149.1 I 0.489
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.488
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.486
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.483
Pm002934 Prunus mume Pm002934 I 0.483
Bra037266 Brassica rapa Bra037266 I 0.483
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.483
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.483
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.481
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.479
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.479
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.478
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.478
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.478
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.478
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.476
HMGB4 Arabidopsis thaliana AT2G17560 I 0.476
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.474
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.474
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.474
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.473
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.473
Ca_10725 Cicer arietinum Ca_10725 I 0.473
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.473
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.473
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.473
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.473
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.473
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.472
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.472
Cla009093 Citrullus lanatus Cla009093 I 0.469
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.469
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.469
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.469
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.469
30170.m014386 Ricinus communis 30170.m014386 I 0.469
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.469
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.469
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.469
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.469
Bra017723 Brassica rapa Bra017723 I 0.468
Bo1g006360 Brassica oleracea Bo1g006360 I 0.468
Bra011624 Brassica rapa Bra011624 I 0.468
Bo7g117500 Brassica oleracea Bo7g117500 I 0.468
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.468
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.467
Ca_19340 Cicer arietinum Ca_19340 I 0.467
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.467
mgf016363m Mimulus guttatus mgf016363m I 0.467
Ca_04825 Cicer arietinum Ca_04825 I 0.465
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.465
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.465
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.464
TCM_034406 Theobroma cacao TCM_034406 I 0.464
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.464
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.464
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.464
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.464
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.463
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.462
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.462
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.462
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.462
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.462
Bo5g030580 Brassica oleracea Bo5g030580 I 0.462
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.462
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.462
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.462
HMGB2 Arabidopsis thaliana AT1G20693 I 0.462
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.462
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.457
Bo7g014280 Brassica oleracea Bo7g014280 I 0.457
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.457
MDP0000275042 Malus domestica MDP0000275042 I 0.457
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.454
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.454
MDP0000362980 Malus domestica MDP0000362980 I 0.452
MDP0000757111 Malus domestica MDP0000757111 I 0.452
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.452
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.452
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.452
TCM_000068 Theobroma cacao TCM_000068 I 0.452
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.452
Pm018913 Prunus mume Pm018913 I 0.452
SNAPOd2T00000370001 Oikopleura dioica SNAPOd2T00000370001 N 0.450
29669.m000844 Ricinus communis 29669.m000844 I 0.450
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.449
Bra002073 Brassica rapa Bra002073 I 0.449
29701.m000600 Ricinus communis 29701.m000600 I 0.449
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.448
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.448
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.446
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.446
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.446
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.444
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.442
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.442
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.442
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.442
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.442
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.442
Bo8g070350 Brassica oleracea Bo8g070350 I 0.441
Bo7g061420 Brassica oleracea Bo7g061420 I 0.441
Pm026798 Prunus mume Pm026798 I 0.440
HMG-1 Pisum sativum Q41026_PEA D 0.440
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.439
TCM_042534 Theobroma cacao TCM_042534 I 0.439
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.438
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.438
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.438
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.438
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.438
HMGB1 Arabidopsis thaliana AT3G51880 I 0.438
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.437
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.436
OLONG_000335 Oryza longistaminata OLONG_000335 N 0.436
Si031512m.g Setaria italica Si031512m.g I 0.436
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.436
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.436
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.436
Bra025838 Brassica rapa Bra025838 I 0.434
Bo7g101270 Brassica oleracea Bo7g101270 I 0.434
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.434
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.434
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.433
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.433
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.433
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.433
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.433
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.433
HMGB3 Arabidopsis thaliana AT1G20696 I 0.433
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.433
Bo8g081200 Brassica oleracea Bo8g081200 I 0.432
mgf009330m Mimulus guttatus mgf009330m I 0.431
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.430
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.430
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.430
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.429
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.429
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.429
MDP0000607529 Malus domestica MDP0000607529 I 0.427
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.426
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.425
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.425
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.425
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.425
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.424
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.423
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.423
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.423
PMAA_044390 Penicillium marneffei PMAA_044390 N 0.420
PMAA_044390 Talaromyces marneffei PMAA_044390 N 0.420
Ca_09896 Cicer arietinum Ca_09896 I 0.416
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.416