TRIUR3_13577 (Triticum urartu)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 TRIUR3_13577 T333054_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.633 0.652
NHP6A
M01566_2.00
Saccharomyces cerevisiae
NHRYWWWN

NWWWRYDN
PBM
Zhu et al.(2009)
Nhp6a
0.436 0.435
NHP6A
M08606_2.00
Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN

NHNNHYWHTATATAWNNDHNH
Misc
DeBoer et al.(2011)
YPR052C_879
0.436 0.435
NHP6B
M01565_2.00
Saccharomyces cerevisiae
NNWHWRYDNN

NNHRYWDWNN
PBM
Zhu et al.(2009)
Nhp6b
0.430 0.406
NHP6B
M08603_2.00
Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN

NHNYWWWWTATAWWNDDAND
Misc
DeBoer et al.(2011)
YBR089C-A_792
0.430 0.406
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TRIUR3_13577-P1 Sox 42 111

Links

Other Sox family TFs
Other Triticum urartu TFs

458 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_004_00804 Aquilegia coerulea Aquca_004_00804 N 0.000
AT3G54390 Arabidopsis thaliana AT3G54390 N 0.000
Bo8g068640 Brassica oleracea Bo8g068640 N 0.000
Bo8g083630 Brassica oleracea Bo8g083630 N 0.000
Bostr.0697s0050 Boechera stricta Bostr.0697s0050 N 0.000
Bra007069 Brassica rapa Bra007069 N 0.000
Cagra.0562s0030 Capsella grandiflora Cagra.0562s0030 N 0.000
Carubv10019255m.g Capsella rubella Carubv10019255m.g N 0.000
cassava22232.valid.m1 Manihot esculenta cassava22232.valid.m1 N 0.000
Ciclev10001759m.g Citrus clementina Ciclev10001759m.g N 0.000
Cla010096 Citrullus lanatus Cla010096 N 0.000
fgenesh2_kg.5__1832__AT3G54390.1 Arabidopsis lyrata fgenesh2_kg.5__1832__AT3G54390.1 N 0.000
GLYMA11G25570 Glycine max GLYMA11G25570 N 0.000
GLYMA13G26550 Glycine max GLYMA13G26550 N 0.000
GLYMA15G37451 Glycine max GLYMA15G37451 N 0.000
LjSGA_030847.2 Lotus japonicus LjSGA_030847.2 N 0.000
MDP0000123719 Malus domestica MDP0000123719 N 0.000
MDP0000727700 Malus domestica MDP0000727700 N 0.000
Pm016744 Prunus mume Pm016744 N 0.000
POPTR_0001s06580 Populus trichocarpa POPTR_0001s06580 N 0.000
POPTR_0003s19470 Populus trichocarpa POPTR_0003s19470 N 0.000
PRUPE_ppa007968mg Prunus persica PRUPE_ppa007968mg N 0.000
SapurV1A.0009s1160 Salix purpurea SapurV1A.0009s1160 N 0.000
SapurV1A.0574s0200 Salix purpurea SapurV1A.0574s0200 N 0.000
Solyc01g096470.2 Solanum lycopersicum Solyc01g096470.2 N 0.000