VIT_18s0001g03950 (Vitis vinifera)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 VIT_18s0001g03950 T333244_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_18s0001g03950.t01 Sox 232 278

Links

Other Sox family TFs
Other Vitis vinifera TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.638
30116.m000393 Ricinus communis 30116.m000393 N 0.637
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.629
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.618
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.618
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.612
PK16821.1 Cannabis sativa PK16821.1 N 0.601
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.601
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.594
Cla002005 Citrullus lanatus Cla002005 N 0.594
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.587
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.587
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.587
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.586
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.586
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.586
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.586
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.586
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.586
OB07G29110 Oryza brachyantha OB07G29110 N 0.586
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.586
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.586
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.586
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.586
OBART02G34050 Oryza barthii OBART02G34050 N 0.586
OS02G0770600 Oryza sativa OS02G0770600 N 0.586
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.586
Si017699m.g Setaria italica Si017699m.g N 0.586
OB02G40920 Oryza brachyantha OB02G40920 N 0.580
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.570
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.562
MDP0000597087 Malus domestica MDP0000597087 N 0.560
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.558
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.558
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.553
mgf013454m Mimulus guttatus mgf013454m N 0.548
mgf000387m Mimulus guttatus mgf000387m N 0.548
F775_20121 Aegilops tauschii F775_20121 N 0.548
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.548
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.548
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.548
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.546
TCM_006422 Theobroma cacao TCM_006422 N 0.546
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.537
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.534
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.529
PK04394.1 Cannabis sativa PK04394.1 N 0.528
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.486
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.472
MDP0000634922 Malus domestica MDP0000634922 N 0.469
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.458
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.455