NHP10 (Saccharomyces cerevisiae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 YDL002C T333321_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables DNA end binding activity and heteroduplex DNA loop binding activity. Involved in double-strand break repair; nucleosome mobilization; and telomere maintenance via recombination. Located in nucleus. Part of Ino80 complex. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP10
M00068_2.00		 Saccharomyces cerevisiae
TCCCCGGC
GCCGGGGA		 PBM
Badis et al.(2008)
NHP10_2069		 (Direct) (Direct)
NHP10
M07496_2.00		 Saccharomyces cerevisiae
YCCCCGGY
RCCGGGGR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0344.1		 (Direct) (Direct)
NHP10
M08604_2.00		 Saccharomyces cerevisiae
TCCCCGGY
RCCGGGGA		 Misc
DeBoer et al.(2011)
YDL002C_502		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.415 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00068_2.00 Sox 51 115

DNA Binding Domains

Protein ID Domain From To Sequence
YDL002C Sox 94 158

Links

Other Sox family TFs
Other Saccharomyces cerevisiae TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
3225_YDL002C Saccharomyces mikatae 3225_YDL002C I 0.741
603_YDL002C Saccharomyces bayanus 603_YDL002C I 0.741
3735_YDL002C Saccharomyces paradoxus 3735_YDL002C I 0.741
SKUD_167206 Saccharomyces kudriavzevii SKUD_167206 I 0.733
KNAG_0K01480 Kazachstania naganishii KNAG_0K01480 I 0.673
KAFR_0F02510 Kazachstania africana KAFR_0F02510 I 0.662
CAGL0M10505g Candida glabrata CAGL0M10505g I 0.627
NDAI_0A07360 Naumovozyma dairenensis NDAI_0A07360 I 0.626
Kpol_1045p57 Vanderwaltozyma polyspora Kpol_1045p57 I 0.604
TBLA_0A00160 Tetrapisispora blattae TBLA_0A00160 I 0.584
TPHA_0P00560 Tetrapisispora phaffii TPHA_0P00560 I 0.563
Scas_Contig482.3 Saccharomyces castellii Scas_Contig482.3 I 0.556
NCAS_0A10110 Naumovozyma castellii NCAS_0A10110 I 0.556
ZBAI_02112 Zygosaccharomyces bailii ZBAI_02112 I 0.546
ZBAI_07968 Zygosaccharomyces bailii ZBAI_07968 I 0.546
TDEL_0D04120 Torulaspora delbrueckii TDEL_0D04120 I 0.544
ZYRO0A04378g Zygosaccharomyces rouxii ZYRO0A04378g I 0.539
G210_3517 Candida maltosa G210_3517 I 0.441
CD36_81110 Candida dubliniensis CD36_81110 I 0.419
Ecym_5292 Eremothecium cymbalariae Ecym_5292 I 0.417
AACERI_AaceriAEL005C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAEL005C I 0.417
LALA0_S09e06216g Lachancea lanzarotensis LALA0_S09e06216g I 0.415