HMO1 (Saccharomyces cerevisiae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 YDR174W T333322_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables DNA binding activity, bending; double-stranded DNA binding activity; and four-way junction DNA binding activity. Involved in several processes, including chromosome organization; regulation of transcription, DNA-templated; and transcriptional start site selection at RNA polymerase II promoter. Located in cytosol; nucleolus; and rDNA heterochromatin. Part of small-subunit processome. Colocalizes with chromatin. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMO1
M11344_2.00		 Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$_HMO1_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
YDR174W Sox 106 179

Links

Other Sox family TFs
Other Saccharomyces cerevisiae TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
3875_YDR174W Saccharomyces mikatae 3875_YDR174W I 0.741
4397_YDR174W Saccharomyces paradoxus 4397_YDR174W I 0.741
SKUD_149803 Saccharomyces kudriavzevii SKUD_149803 I 0.741
SU7_2586 Saccharomyces arboricola SU7_2586 I 0.741
SAKL0H14234g Lachancea kluyveri SAKL0H14234g I 0.714
LALA0_S03e03444g Lachancea lanzarotensis LALA0_S03e03444g I 0.706
KAFR_0B06030 Kazachstania africana KAFR_0B06030 I 0.676
KNAG_0A04840 Kazachstania naganishii KNAG_0A04840 I 0.669
Ecym_4194 Eremothecium cymbalariae Ecym_4194 I 0.645
AGOS_AGL141W Ashbya gossypii AGOS_AGL141W I 0.645
Kpol_1024p24 Vanderwaltozyma polyspora Kpol_1024p24 I 0.645
CAGL0E00737g Candida glabrata CAGL0E00737g I 0.643
KLTH0F09020g Kluyveromyces thermotolerans KLTH0F09020g I 0.643
KLTH0F09020g Lachancea thermotolerans KLTH0F09020g I 0.643
ZBAI_01315 Zygosaccharomyces bailii ZBAI_01315 I 0.617
ZBAI_09581 Zygosaccharomyces bailii ZBAI_09581 I 0.617
BN7_2978 Wickerhamomyces ciferrii BN7_2978 I 0.613
Scas_Contig682.13 Saccharomyces castellii Scas_Contig682.13 I 0.609
NCAS_0B03190 Naumovozyma castellii NCAS_0B03190 I 0.609
TPHA_0C02460 Tetrapisispora phaffii TPHA_0C02460 I 0.605
NDAI_0A01190 Naumovozyma dairenensis NDAI_0A01190 I 0.602
TDEL_0F04960 Torulaspora delbrueckii TDEL_0F04960 I 0.587
TBLA_0A01170 Tetrapisispora blattae TBLA_0A01170 I 0.581
ZYRO0C03718g Zygosaccharomyces rouxii ZYRO0C03718g I 0.580
TBLA_0H01020 Tetrapisispora blattae TBLA_0H01020 I 0.562