IXR1 (Saccharomyces cerevisiae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 YKL032C T333323_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables core promoter sequence-specific DNA binding activity and damaged DNA binding activity. Involved in several processes, including cellular response to hypoxia; regulation of nucleobase-containing compound metabolic process; and response to cisplatin. Colocalizes with chromatin. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IXR1
M08429_2.00		 Saccharomyces cerevisiae
CMCCGCTYCCGGYTT
AARCCGGRAGCGGKG		 ChIP-chip
Mathelier et al.(2014)
MA0323.1		 (Direct) (Direct)
IXR1
M11345_2.00		 Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$IXR1_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
YKL032C Sox 361 429
YKL032C Sox 434 500

Links

Other Sox family TFs
Other Saccharomyces cerevisiae TFs

Invalid Input OrderBy

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action