ABF2 (Saccharomyces cerevisiae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 YMR072W T333324_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF2
M00069_2.00		 Saccharomyces cerevisiae
NNCTCTAGASN
NSTCTAGAGNN		 PBM
Badis et al.(2008)
ABF2_2116		 (Direct) (Direct)
ABF2
M07497_2.00		 Saccharomyces cerevisiae
TCTAGAN
NTCTAGA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0266.1		 (Direct) (Direct)
ABF2
M08605_2.00		 Saccharomyces cerevisiae
TCTAGAN
NTCTAGA		 Misc
DeBoer et al.(2011)
YMR072W_541		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.415 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00069_2.00 Sox 42 110
M00069_2.00 Sox 115 182

DNA Binding Domains

Protein ID Domain From To Sequence
YMR072W Sox 43 111
YMR072W Sox 116 183

Links

Other Sox family TFs
Other Saccharomyces cerevisiae TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
17027_YMR072W Saccharomyces paradoxus 17027_YMR072W I 0.710
18434_YMR072W Saccharomyces bayanus 18434_YMR072W I 0.674
SU7_2538 Saccharomyces arboricola SU7_2538 I 0.641
SKUD_152802 Saccharomyces kudriavzevii SKUD_152802 I 0.639
16668_YMR072W Saccharomyces mikatae 16668_YMR072W I 0.638