YQE_10385 (Dendroctonus ponderosae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 YQE_10385 T333350_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.436 0.478
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN72996 Sox 31 97

Links

Other Sox family TFs
Other Dendroctonus ponderosae TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.607
TC011144 Tribolium castaneum TC011144 N 0.604
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.527
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.527
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.513
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.466
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.464
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.463
hmg20b Oryzias latipes ENSORLG00000004640 I 0.461
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.461
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.461
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.461
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.461
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.461
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.461
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.455
SMAR000790 Strigamia maritima SMAR000790 I 0.451
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.449
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.449
HMG20B Canis familiaris ENSCAFG00000019215 I 0.436
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.436
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.436
Aan_R011684 Calypte anna Aan_R011684 I 0.436
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.436
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.436
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.436
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.436
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.436
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.436
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.436
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.436
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.436
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.436
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.436
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.436
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.436
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.436
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.436
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.436
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.436
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.436
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.436
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.436
Hmg20b Mus musculus ENSMUSG00000020232 D 0.436
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.436
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.436
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.436
HMG20B Felis catus ENSFCAG00000026167 I 0.436
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.436
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.436
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.436
HMG20B Homo sapiens ENSG00000064961 I 0.436
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.436
hmg20b Danio rerio ENSDARG00000042045 I 0.436
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.436
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.436
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.436
HMG20B Procavia capensis ENSPCAG00000010772 I 0.436
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.436
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.436
HMG20B Gallus gallus ENSGALG00000027838 I 0.436
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.436
CapteG191691 Capitella teleta CapteG191691 I 0.435
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.429
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.426
SMAR002604 Strigamia maritima SMAR002604 I 0.420